Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   B9D94_RS28625 Genome accession   NZ_CP020866
Coordinates   5936226..5936726 (+) Length   166 a.a.
NCBI ID   WP_148248524.1    Uniprot ID   -
Organism   Paenibacillus sp. Cedars     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5931226..5941726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9D94_RS28585 (B9D94_28705) - 5931797..5932297 (+) 501 WP_006207368.1 DUF4446 family protein -
  B9D94_RS28590 (B9D94_28710) yyaC 5932272..5932877 (-) 606 WP_036640550.1 spore protease YyaC -
  B9D94_RS28595 (B9D94_28715) - 5933150..5933404 (+) 255 WP_063478210.1 DUF3343 domain-containing protein -
  B9D94_RS28600 (B9D94_28720) - 5933484..5934311 (+) 828 WP_367613808.1 mechanosensitive ion channel family protein -
  B9D94_RS28605 (B9D94_28725) - 5934379..5934600 (+) 222 WP_006207362.1 DUF951 domain-containing protein -
  B9D94_RS28615 (B9D94_28735) - 5935461..5935655 (-) 195 WP_006207336.1 YjzC family protein -
  B9D94_RS28620 (B9D94_28740) rpsF 5935895..5936179 (+) 285 WP_036640509.1 30S ribosomal protein S6 -
  B9D94_RS28625 (B9D94_28745) ssbA 5936226..5936726 (+) 501 WP_148248524.1 single-stranded DNA-binding protein Machinery gene
  B9D94_RS28630 (B9D94_28750) rpsR 5936748..5937020 (+) 273 WP_006207333.1 30S ribosomal protein S18 -
  B9D94_RS28635 (B9D94_28760) - 5937856..5938530 (+) 675 WP_148248525.1 SOS response-associated peptidase -
  B9D94_RS28640 (B9D94_28765) - 5939258..5941024 (+) 1767 WP_076151351.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18300.98 Da        Isoelectric Point: 4.8536

>NTDB_id=226663 B9D94_RS28625 WP_148248524.1 5936226..5936726(+) (ssbA) [Paenibacillus sp. Cedars]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTGQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRETSGGGGTREESSFSGGSSSSSNSSGGNRGNNNYSRNNNQDPFSDEGKPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=226663 B9D94_RS28625 WP_148248524.1 5936226..5936726(+) (ssbA) [Paenibacillus sp. Cedars]
TTGTTGAACCGTGTCATTTTGATTGGCCGACTGACTAAGGATCCCGAGCTGCGATATACTCCTTCAGGTGTTGCTGTAAC
GCAATTTACACTTGCTGTTGATCGTCCATTTACTGGACAAGGCGGGGAGCGCGAAGCGGATTTTATTCCGGTCGTGACCT
GGAGACAGCTTGCGGAGACTTGTGCCAACTATCTGCGTAAAGGCCGTCTGACGGCTGTAGAGGGGCGCATTCAAGTGCGG
AATTACGAGAATAACGAAGGTAAGCGTGTATACGTCACCGAAGTCATTGCCGATAATGTTCGCTTCTTGGAGTCAAACCG
TGAAACAAGCGGTGGCGGAGGAACTCGTGAGGAATCGTCGTTCAGCGGAGGAAGCAGCAGCAGCAGCAATAGCAGCGGCG
GAAACCGTGGGAACAATAACTACTCGCGAAACAACAATCAGGATCCTTTTTCCGATGAAGGAAAACCGATCGATATATCG
GATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.536
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

62.651

0.361

Multiple sequence alignment