Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   B7941_RS19655 Genome accession   NZ_CP020805
Coordinates   3943772..3944935 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain 9D-6     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3938772..3949935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS19625 (B7941_19610) - 3939036..3939455 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  B7941_RS19630 (B7941_19615) comFC 3939529..3940218 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  B7941_RS19635 (B7941_19620) - 3940224..3940508 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  B7941_RS19640 (B7941_19625) comFA 3940566..3941951 (-) 1386 WP_085342350.1 DEAD/DEAH box helicase Machinery gene
  B7941_RS19645 (B7941_19630) - 3942060..3942908 (-) 849 WP_007407483.1 DegV family protein -
  B7941_RS19650 (B7941_19635) degU 3943006..3943695 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B7941_RS19655 (B7941_19640) degS 3943772..3944935 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  B7941_RS19660 (B7941_19645) - 3945158..3945805 (+) 648 WP_007407485.1 YigZ family protein -
  B7941_RS19665 (B7941_19650) - 3945810..3947030 (+) 1221 WP_085342351.1 LCP family protein -
  B7941_RS19670 (B7941_19655) - 3947129..3948205 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  B7941_RS19675 (B7941_19660) tuaH 3948338..3949534 (-) 1197 WP_085342352.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=225984 B7941_RS19655 WP_007407484.1 3943772..3944935(-) (degS) [Bacillus velezensis strain 9D-6]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=225984 B7941_RS19655 WP_007407484.1 3943772..3944935(-) (degS) [Bacillus velezensis strain 9D-6]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCTTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment