Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   B7941_RS19630 Genome accession   NZ_CP020805
Coordinates   3939529..3940218 (-) Length   229 a.a.
NCBI ID   WP_198161198.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3934529..3945218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS19595 (B7941_19580) fliW 3934620..3935051 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  B7941_RS19600 (B7941_19585) - 3935081..3935650 (-) 570 WP_007407476.1 DUF6470 family protein -
  B7941_RS19605 (B7941_19590) flgL 3935741..3936658 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  B7941_RS19610 (B7941_19595) flgK 3936670..3938187 (-) 1518 WP_039063717.1 flagellar hook-associated protein FlgK -
  B7941_RS19615 (B7941_19600) - 3938203..3938685 (-) 483 WP_003151394.1 flagellar protein FlgN -
  B7941_RS19620 (B7941_19605) flgM 3938700..3938966 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B7941_RS19625 (B7941_19610) - 3939036..3939455 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  B7941_RS19630 (B7941_19615) comFC 3939529..3940218 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  B7941_RS19635 (B7941_19620) - 3940224..3940508 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  B7941_RS19640 (B7941_19625) comFA 3940566..3941951 (-) 1386 WP_085342350.1 DEAD/DEAH box helicase Machinery gene
  B7941_RS19645 (B7941_19630) - 3942060..3942908 (-) 849 WP_007407483.1 DegV family protein -
  B7941_RS19650 (B7941_19635) degU 3943006..3943695 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B7941_RS19655 (B7941_19640) degS 3943772..3944935 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25215.80 Da        Isoelectric Point: 8.0779

>NTDB_id=225981 B7941_RS19630 WP_198161198.1 3939529..3940218(-) (comFC) [Bacillus velezensis strain 9D-6]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=225981 B7941_RS19630 WP_198161198.1 3939529..3940218(-) (comFC) [Bacillus velezensis strain 9D-6]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTATTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCAAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCTGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGATAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment