Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   B7941_RS19640 Genome accession   NZ_CP020805
Coordinates   3940566..3941951 (-) Length   461 a.a.
NCBI ID   WP_085342350.1    Uniprot ID   -
Organism   Bacillus velezensis strain 9D-6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3935566..3946951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS19605 (B7941_19590) flgL 3935741..3936658 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  B7941_RS19610 (B7941_19595) flgK 3936670..3938187 (-) 1518 WP_039063717.1 flagellar hook-associated protein FlgK -
  B7941_RS19615 (B7941_19600) - 3938203..3938685 (-) 483 WP_003151394.1 flagellar protein FlgN -
  B7941_RS19620 (B7941_19605) flgM 3938700..3938966 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  B7941_RS19625 (B7941_19610) - 3939036..3939455 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  B7941_RS19630 (B7941_19615) comFC 3939529..3940218 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  B7941_RS19635 (B7941_19620) - 3940224..3940508 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  B7941_RS19640 (B7941_19625) comFA 3940566..3941951 (-) 1386 WP_085342350.1 DEAD/DEAH box helicase Machinery gene
  B7941_RS19645 (B7941_19630) - 3942060..3942908 (-) 849 WP_007407483.1 DegV family protein -
  B7941_RS19650 (B7941_19635) degU 3943006..3943695 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B7941_RS19655 (B7941_19640) degS 3943772..3944935 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  B7941_RS19660 (B7941_19645) - 3945158..3945805 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52616.03 Da        Isoelectric Point: 10.2715

>NTDB_id=225982 B7941_RS19640 WP_085342350.1 3940566..3941951(-) (comFA) [Bacillus velezensis strain 9D-6]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=225982 B7941_RS19640 WP_085342350.1 3940566..3941951(-) (comFA) [Bacillus velezensis strain 9D-6]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGTATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAATCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCTCGCTCTGTAACCGATTGGGTT
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCAGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment