Detailed information NTG0225927

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: B7941_RS04560
• Genome accession: NZ_CP020805
• Coordinates: 899369..900517 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 9D-6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 894369..905517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B7941_RS04540 (B7941_04540)	-	894766..895449 (-)	684	WP_085341728.1	ABC transporter ATP-binding protein	-
B7941_RS04545 (B7941_04545)	-	895464..896900 (-)	1437	WP_085341729.1	ABC transporter permease	-
B7941_RS04550 (B7941_04550)	-	897113..897796 (+)	684	WP_007410267.1	response regulator transcription factor	-
B7941_RS04555 (B7941_04555)	-	897783..899216 (+)	1434	WP_161968256.1	sensor histidine kinase	-
B7941_RS04560 (B7941_04560)	rapC	899369..900517 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
B7941_RS04565 (B7941_04565)	phrC	900501..900620 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
B7941_RS04570 (B7941_04570)	-	900768..900878 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
B7941_RS04575 (B7941_04575)	-	900958..902322 (-)	1365	WP_059366589.1	aspartate kinase	-
B7941_RS04580 (B7941_04580)	ceuB	902736..903689 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
B7941_RS04585 (B7941_04585)	-	903679..904626 (+)	948	WP_007410274.1	iron chelate uptake ABC transporter family permease subunit	-
B7941_RS04590 (B7941_04590)	-	904620..905378 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=225927 B7941_RS04560 WP_007410270.1 899369..900517(+) (rapC) [Bacillus velezensis strain 9D-6]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=225927 B7941_RS04560 WP_007410270.1 899369..900517(+) (rapC) [Bacillus velezensis strain 9D-6]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568