Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   B7473_RS08905 Genome accession   NZ_CP020713
Coordinates   1770097..1771083 (+) Length   328 a.a.
NCBI ID   WP_101766634.1    Uniprot ID   -
Organism   Staphylococcus aureus strain K17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765097..1776083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7473_RS08880 (B7473_08870) opp4B 1765311..1766273 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  B7473_RS08885 (B7473_08875) opp4C 1766285..1767165 (+) 881 Protein_1689 oligopeptide ABC transporter permease -
  B7473_RS08890 (B7473_08880) trpS 1767207..1768196 (-) 990 WP_000448943.1 tryptophan--tRNA ligase -
  B7473_RS08895 (B7473_08885) spxA 1768491..1768886 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  B7473_RS08900 (B7473_08890) mecA 1769257..1769976 (+) 720 WP_001217723.1 adaptor protein MecA -
  B7473_RS08905 (B7473_08895) coiA 1770097..1771083 (+) 987 WP_101766634.1 competence protein CoiA Machinery gene
  B7473_RS08910 (B7473_08900) pepF 1771131..1772939 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  B7473_RS08915 (B7473_08905) yjbH 1773399..1774205 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  B7473_RS08920 (B7473_08910) - 1774228..1774593 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  B7473_RS08925 (B7473_08915) - 1774697..1775290 (-) 594 WP_000224611.1 CYTH domain-containing protein -
  B7473_RS08930 (B7473_08920) - 1775476..1775823 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.51 Da        Isoelectric Point: 9.7132

>NTDB_id=225467 B7473_RS08905 WP_101766634.1 1770097..1771083(+) (coiA) [Staphylococcus aureus strain K17]
MLVALNEEQERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=225467 B7473_RS08905 WP_101766634.1 1770097..1771083(+) (coiA) [Staphylococcus aureus strain K17]
ATGTTAGTAGCTTTAAATGAAGAACAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.256

100

0.973

Multiple sequence alignment