Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VV1_RS06760 Genome accession   NC_004459
Coordinates   1412083..1412730 (-) Length   215 a.a.
NCBI ID   WP_011079388.1    Uniprot ID   Q7MHB7
Organism   Vibrio vulnificus CMCP6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407083..1417730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS06750 (VV1_1427) uvrA 1408060..1410882 (-) 2823 WP_011079386.1 excinuclease ABC subunit UvrA -
  VV1_RS06755 (VV1_1428) galU 1411025..1411897 (-) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VV1_RS06760 (VV1_1429) qstR 1412083..1412730 (-) 648 WP_011079388.1 response regulator transcription factor Regulator
  VV1_RS06765 (VV1_1430) ssb 1413030..1413569 (+) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  VV1_RS06770 (VV1_1432) csrD 1413722..1415719 (+) 1998 WP_043877331.1 RNase E specificity factor CsrD -
  VV1_RS06775 (VV1_1433) - 1415732..1417192 (+) 1461 WP_011079391.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24673.63 Da        Isoelectric Point: 9.8565

>NTDB_id=22532 VV1_RS06760 WP_011079388.1 1412083..1412730(-) (qstR) [Vibrio vulnificus CMCP6]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAITDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=22532 VV1_RS06760 WP_011079388.1 1412083..1412730(-) (qstR) [Vibrio vulnificus CMCP6]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCTGATCCCAATCATCGTAATCGCA
TCTTATTAATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATTACAGACATGGCCAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGTG
CACAACTCATCCACTACTATCGAAATATGGTTTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGCTGCGTGCAGTCTGGCAAGTCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47

Multiple sequence alignment