Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VV1_RS06265 Genome accession   NC_004459
Coordinates   1306143..1306775 (-) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio vulnificus CMCP6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301143..1311775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS06250 (VV1_1314) astA 1302434..1303453 (+) 1020 WP_011079294.1 arginine N-succinyltransferase -
  VV1_RS06255 (VV1_1315) astD 1303471..1304928 (+) 1458 WP_043920934.1 succinylglutamate-semialdehyde dehydrogenase -
  VV1_RS06260 (VV1_1317) - 1305141..1305932 (+) 792 WP_011079296.1 DUF1338 domain-containing protein -
  VV1_RS06265 (VV1_1318) crp 1306143..1306775 (-) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  VV1_RS06270 (VV1_1319) - 1307018..1307887 (-) 870 WP_011079298.1 phosphoribulokinase -
  VV1_RS06275 (VV1_1320) - 1308016..1308228 (-) 213 WP_011079299.1 YheU family protein -
  VV1_RS06280 (VV1_1321) - 1308284..1309261 (-) 978 WP_011079300.1 hydrolase -
  VV1_RS06285 (VV1_1322) - 1309407..1309886 (-) 480 WP_011079301.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=22525 VV1_RS06265 WP_011079297.1 1306143..1306775(-) (crp) [Vibrio vulnificus CMCP6]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=22525 VV1_RS06265 WP_011079297.1 1306143..1306775(-) (crp) [Vibrio vulnificus CMCP6]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTCATTCATGCGGGCGAAAAAGCAGAAACGCTTTACTACATCGTAAAAGGTTCTGTGGCGGTACTAATTAAGG
ATGAAGAAGGTAAAGAAATGATCCTTTCTTACCTAAATCAAGGTGACTTTATTGGTGAACTAGGCCTGTTCGAAGAAGGT
CAAGAGCGTACCGCATGGGTTCGTGCAAAATCACCTTGTGAAGTCGCAGAAATCTCATTCAAGAAATTCCGTCAGCTCAT
TCAGGTCAACCCTGACATCCTGATGCGTCTATCTGCTCAGATGGCAAGCCGTCTGCAAGTAACCAGCCAAAAAGTGGGTG
ACTTAGCATTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTATTGAATCTGGCTAAACAACCAGATGCGATGACGCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTCGAAGAGCAGAACCTGATTTCTGCACACGGCAAGACTATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment