Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C1N50_RS13770 Genome accession   NZ_CP026321
Coordinates   2878717..2879445 (+) Length   242 a.a.
NCBI ID   WP_005425318.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-53     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2873717..2884445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N50_RS13755 (C1N50_13750) clpC 2874153..2876726 (-) 2574 WP_103413561.1 ATP-dependent chaperone ClpB Regulator
  C1N50_RS13760 (C1N50_13755) pgeF 2876873..2877601 (-) 729 WP_103413562.1 peptidoglycan editing factor PgeF -
  C1N50_RS13765 (C1N50_13760) rluD 2877603..2878580 (-) 978 WP_103413563.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C1N50_RS13770 (C1N50_13765) comL 2878717..2879445 (+) 729 WP_005425318.1 outer membrane protein assembly factor BamD Machinery gene
  C1N50_RS13775 (C1N50_13770) - 2879588..2881057 (+) 1470 WP_045369911.1 lytic transglycosylase F -
  C1N50_RS13780 (C1N50_13775) hpf 2881434..2881760 (+) 327 WP_005425319.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  C1N50_RS13785 (C1N50_13780) pheA 2882004..2883182 (+) 1179 WP_005533293.1 prephenate dehydratase -
  C1N50_RS13790 (C1N50_13785) yjjX 2883225..2883758 (+) 534 WP_038889003.1 inosine/xanthosine triphosphatase -
  C1N50_RS13795 (C1N50_13790) trpR 2883873..2884175 (-) 303 WP_005425333.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27847.63 Da        Isoelectric Point: 5.2063

>NTDB_id=225211 C1N50_RS13770 WP_005425318.1 2878717..2879445(+) (comL) [Vibrio campbellii strain BoB-53]
MKHQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQTSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNVDRSDRDPEPVKKAFDDFKKLLERYPNSPYAED
SQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKAFPDTEAARKSLEIQLEAYKQLKLDDAVARTEELIKLNP
AN

Nucleotide


Download         Length: 729 bp        

>NTDB_id=225211 C1N50_RS13770 WP_005425318.1 2878717..2879445(+) (comL) [Vibrio campbellii strain BoB-53]
ATGAAACATCAGACTTTAACAGGCCTTTTAGCGGTATCCCTTCTGTTTGGCTGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCTGAACTGTATGCAGACGCGCAAACTTCTCTGCAAAGCGGTAACTGGCTTTCTGCCATCGAAAAATTAG
AAGCTTTGGATTCGCGTTACCCGTTTGGTGCCTACTCTGAGCAGGTACAACTTGACCTTATCTACGCGTACTACAAAAAC
GATGACCTAGCATTAGGTCTGGCAACGATCTCTCGCTTTATGCGTTTGAACCCGACTCACGAAAAAATGGACTGGGTTTT
GTACATGCGTGGTTTGAGCCACATGGCGCAAGACCGTAACTTCATGCATGACTTGTTCAACGTTGATCGTAGTGACCGTG
ATCCAGAGCCAGTGAAGAAAGCATTCGACGACTTCAAAAAGCTGCTAGAACGTTACCCGAACAGCCCATATGCGGAAGAT
TCACAGAAACGTATGGTGGCGCTAAAGAACCGTCTTGCAAACTACGATCTAGCGACGGCAGACTTCTACTTGCGTCGTGA
AGCTTGGATTGCAGCGATCAACCGTTCTCAAGAGCTTCAAAAAGCGTTCCCTGATACAGAAGCGGCGCGCAAATCACTTG
AGATTCAGTTAGAAGCCTACAAGCAATTGAAACTGGATGACGCCGTTGCAAGAACGGAAGAGCTTATCAAGCTTAACCCA
GCAAACTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.174

0.393
  comL Neisseria gonorrhoeae MS11

39.167

99.174

0.388

Multiple sequence alignment