Detailed information NTG0225210

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: C1N50_RS13755
• Genome accession: NZ_CP026321
• Coordinates: 2874153..2876726 (-)
• Length: 857 a.a.
• NCBI ID: WP_103413561.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain BoB-53
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2869153..2881726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1N50_RS13755 (C1N50_13750)	clpC	2874153..2876726 (-)	2574	WP_103413561.1	ATP-dependent chaperone ClpB	Regulator
C1N50_RS13760 (C1N50_13755)	pgeF	2876873..2877601 (-)	729	WP_103413562.1	peptidoglycan editing factor PgeF	-
C1N50_RS13765 (C1N50_13760)	rluD	2877603..2878580 (-)	978	WP_103413563.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C1N50_RS13770 (C1N50_13765)	comL	2878717..2879445 (+)	729	WP_005425318.1	outer membrane protein assembly factor BamD	Machinery gene
C1N50_RS13775 (C1N50_13770)	-	2879588..2881057 (+)	1470	WP_045369911.1	lytic transglycosylase F	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 96000.69 Da
• Isoelectric Point: 5.1146

>NTDB_id=225210 C1N50_RS13755 WP_103413561.1 2874153..2876726(-) (clpC) [Vibrio campbellii strain BoB-53]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLDVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSSMGTVFNLCDKVAQKRQDSYISSEVFLLAALEDRGPLGQLLKEMGLTEQKVSQAIEKIRGGQKVNDPNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLSL
DMGALVAGAKYRGEFEERLKSVLNELAKEEGNVILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRLQIDSKPESLDKLERKIIQLKIEQQALSNEHDEASEKRLDVLNEELNEKEREYAELEEVWNAEKAALSGTQHIKSELE
QARMDMDFARRAGDLNRMSELQYGRIPELEKQLDLATQAEMQEMTLLRNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQAEAVEVVSNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLASFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSARIQENFATLDYQGIKNEVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSEKAL
DLIAQVGFDPVYGARPLKRAIQQNVENPLAKSILAGQILPDKKVQLIVNNDQIIAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=225210 C1N50_RS13755 WP_103413561.1 2874153..2876726(-) (clpC) [Vibrio campbellii strain BoB-53]
ATGCGTCTTGATAGATTCACAAGTAAGTTTCAAATCGCTATCTCTGATGCTCAGTCACTAGCGTTAGGGCGCGATCATCA
ATATATCGAACCTGTGCACCTAATGGTGGCATTGCTTGATCAGAACGGTAGCCCAATTCGTCCACTGCTAACCATGTTAG
ATGTTGACGTGACTCATCTACGCTCTAAATTGAGCGAAATGTTAGATCGGCTGCCTAAAGTAAGTGGCATCGGCGGTGAT
GTTCAGCTGTCTAGCTCTATGGGGACAGTTTTCAATTTGTGCGACAAAGTGGCTCAAAAGCGTCAGGACTCCTACATCTC
TTCCGAAGTCTTTTTGCTTGCTGCATTAGAAGACCGTGGCCCACTTGGTCAGCTATTAAAAGAGATGGGCTTGACCGAGC
AGAAAGTCAGCCAAGCGATCGAAAAGATCAGAGGTGGTCAAAAGGTCAATGACCCGAACGCGGAAGAACTACGCCAAGCA
TTGGAAAAGTTCACCATAGACCTAACAGAACGCGCAGAGCAGGGTAAGTTAGATCCTGTTATCGGCCGTGATGATGAAAT
CCGCCGTACCATCCAAGTATTGCAGCGTCGTACCAAGAACAACCCAGTGATCATCGGTGAACCAGGTGTGGGTAAAACCG
CTATCGTAGAGGGCTTGGCTCAGCGCATCATTAATAATGAAGTACCAGAGGGGCTACGTGGTCGCCGCGTACTTTCGTTA
GATATGGGCGCACTTGTTGCAGGTGCAAAATATCGTGGTGAATTTGAAGAGCGTTTGAAATCGGTATTGAATGAGTTAGC
GAAAGAAGAAGGTAACGTCATTCTATTCATTGATGAGCTTCATACTATGGTTGGCGCAGGTAAGGGCGAGGGCTCTATGG
ATGCCGGTAATATGCTAAAACCAGCATTGGCTCGTGGTGAACTCCATTGTGTGGGCGCGACTACATTGGATGAATACCGC
CAATATATAGAGAAAGATGCCGCACTTGAGCGTCGTTTCCAAAAAGTGCTGGTGGATGAGCCAACAGTAGAAGATACGAT
TGCCATTCTGCGTGGTTTGAAAGAGCGCTATGAGCTTCACCATCACGTAGAAATTACCGACCCAGCGATCGTGGCTGCCG
CAAGTTTGTCGCATCGTTATGTTTCGGATCGTCAATTGCCTGATAAAGCAATCGACCTTATTGATGAAGCAGCCTCTAGC
ATTCGTCTACAGATCGACTCCAAGCCAGAGTCTTTAGACAAGCTCGAACGTAAAATCATCCAACTTAAGATCGAGCAGCA
AGCGCTGAGCAACGAGCATGATGAAGCAAGTGAAAAGCGCTTGGATGTGCTTAATGAAGAATTGAATGAAAAAGAGCGCG
AGTATGCAGAGCTAGAAGAAGTGTGGAACGCAGAAAAAGCCGCACTATCTGGCACACAACATATTAAAAGTGAGTTAGAG
CAAGCCCGAATGGATATGGACTTTGCACGCCGTGCTGGTGACCTAAACCGCATGTCCGAATTGCAATACGGCCGTATTCC
TGAACTTGAAAAGCAACTTGATCTTGCTACTCAAGCTGAAATGCAAGAAATGACTCTATTGCGGAATAAGGTGACGGACA
ACGAGATTGCAGAAGTGCTCTCTAAGCAAACGGGTATTCCGGTCTCTAAAATGCTCGAAGCAGAAAAAGAAAAACTGCTC
CGCATGGAAGAGGTACTGCACAAACGTGTGATTGGTCAGGCAGAAGCGGTTGAAGTGGTGTCTAACGCAATTCGTCGTAG
TCGAGCTGGCTTATCCGATCCAAACAAACCGATTGGTTCCTTCTTATTCTTAGGTCCAACAGGTGTGGGTAAAACAGAAC
TATGTAAGACACTCGCGAGCTTCATGTTTGATAGTGAAGATGCCATGGTACGTATCGATATGTCCGAGTTCATGGAGAAA
CACTCTGTGGCGAGATTAGTTGGTGCGCCTCCGGGTTATGTTGGCTATGAAGAAGGTGGCTATTTAACAGAAGCAGTTCG
CCGTAAACCTTATTCTGTCATCCTATTAGATGAAGTAGAGAAGGCACACCCAGATGTGTTCAATATTCTGCTGCAAGTAT
TGGATGATGGTCGACTAACTGATGGTCAGGGTAGAACGGTGGATTTCCGTAACACTGTAGTGATCATGACTTCGAACTTG
GGTTCTGCTCGTATCCAGGAGAACTTTGCGACGTTGGATTACCAAGGTATTAAGAATGAAGTAATGGATGTAGTTAGCAA
GCACTTCCGCCCAGAGTTCTTAAACCGTGTTGATGAAAGTGTGGTATTCCACCCGCTTGGTCAAGAGCACATTAAGTCGA
TTGCATCTATTCAGCTTGAGCGTCTAGCGAAACGCTTAGAAGAAAAAGGTTATCAATTAGAGGTATCCGAGAAAGCCCTC
GATTTGATTGCCCAAGTTGGTTTCGATCCTGTCTATGGTGCGCGACCTTTAAAACGTGCAATTCAACAGAATGTTGAGAA
CCCATTAGCGAAATCAATCTTGGCTGGCCAAATCTTGCCAGACAAGAAAGTACAGTTGATTGTGAACAACGACCAAATCA
TTGCTCACCAGTAA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

• AAA lid domain (AAA_lid_9) (342-442)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.713	100	0.473
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	44.07	100	0.442
clpC	Lactococcus lactis subsp. cremoris KW2	46.465	80.863	0.376