Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   C1N51_RS05790 Genome accession   NZ_CP026315
Coordinates   1217684..1219765 (+) Length   693 a.a.
NCBI ID   WP_103410334.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1212684..1224765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS05765 (C1N51_05765) gmk 1213315..1213938 (+) 624 WP_005430186.1 guanylate kinase -
  C1N51_RS05770 (C1N51_05770) rpoZ 1214102..1214374 (+) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  C1N51_RS05775 (C1N51_05775) spoT 1214414..1216534 (+) 2121 WP_005434453.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  C1N51_RS05780 (C1N51_05780) trmH 1216588..1217271 (+) 684 WP_005430068.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  C1N51_RS05790 (C1N51_05790) recG 1217684..1219765 (+) 2082 WP_103410334.1 ATP-dependent DNA helicase RecG Machinery gene
  C1N51_RS05795 (C1N51_05795) - 1219971..1221932 (+) 1962 WP_050904722.1 alpha/beta hydrolase family protein -
  C1N51_RS05800 (C1N51_05800) - 1222185..1223576 (+) 1392 WP_050904723.1 uracil-xanthine permease family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76719.57 Da        Isoelectric Point: 7.5622

>NTDB_id=225088 C1N51_RS05790 WP_103410334.1 1217684..1219765(+) (recG) [Vibrio campbellii strain BoB-90]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMAIDTTFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSNGKLVHAYGEIKRGGMGLEIVHPDYKFYVSEQNPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALSLLDKAAVQELLPSGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLASCDSLKKQLLAQLPFSPTNSQARVVKEIEADLEKTHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGKAKEAELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARYIHDNYPTNATAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=225088 C1N51_RS05790 WP_103410334.1 1217684..1219765(+) (recG) [Vibrio campbellii strain BoB-90]
ATGTCTGCCCAAATGTTATCTGCTGTTCCTTTAACCTCTCTGTCTGGAGTTGGCGCCAAAGTCGCAGAAAAACTCGCCAA
AGTTGGCTTGCATAGCGTTCAAGATCTGCTGTTTCATCTTCCTCTTCGTTACGAAGATCGCACTCGCATTTACCCAATCG
CCAAACTGCATGCCGGGCTCTGGGCGGCGGTACAAGGCAAAGTCATGGCTATCGATACTACTTTCGGCAAACGCAAAATG
CTGACGGTAAAAATCAGCGACGGCAATGGCACCATTACTCTACGCTTTTTTAACTTTACTGCCGCGATGAAGAACAATTT
CTCGAATGGTAAGTTAGTACACGCTTACGGTGAAATTAAGCGTGGCGGTATGGGCTTAGAAATTGTTCACCCTGACTACA
AGTTTTATGTAAGTGAGCAAAATCCGGATGTGGAACAGAGCTTAACTCCCGTTTATCCAACCACCGATGGGTTGCGTCAA
ATCACTTTGCGTAACCTGACGGAACAAGCTTTATCACTCCTCGATAAAGCCGCAGTACAAGAGTTGCTGCCTTCTGGCTT
GTACGATCACCAGATCACCATGTCGCAAGCGCTGCATACGATTCATCGACCGCCTCCAACCATTAATTTGGATGAGTTTG
ATGAAGGTAAACACCCTGCTCAAATTCGGTTGATCATGGAAGAGTTACTGGCGCAGAACCTCTCTATGTTGGCAGTGCGC
AGCAAAGGACAACAGGACGTTGCATTGCCTTTGGCGTCGTGTGACTCGCTGAAAAAGCAACTACTGGCTCAATTGCCCTT
CTCGCCGACCAATTCTCAAGCACGAGTCGTTAAAGAAATTGAAGCTGACTTAGAAAAAACGCACCCAATGATGCGCCTTG
TTCAAGGTGACGTAGGCTCGGGGAAAACTCTAGTTGCTGCGCTTGCTGCCGTCAGAGCCATTGAACACGGCTATCAAGTC
GCTTTAATGGCACCGACCGAGCTGCTCGCCGAACAGCACGCGATTAACTTCGCTAATTGGTTTGAGAAAATGGGCATTCA
AGTCGGTTGGCTGGCGGGCAAATTAAAAGGTAAAGCCAAAGAAGCCGAATTGGCGCGTATTGCCAGTGGTGAAGCGCAAA
TGGTCGTGGGCACTCACGCCCTCTTCCAAGAACATGTTGAGTTCCATCATCTTGCTTTGGTCATTATTGATGAACAACAC
CGCTTTGGTGTCCACCAGCGCTTAGAGCTACGCGAGAAAGGCGCGAAACAAGGCGCTTATCCGCACCAGCTCATCATGAC
AGCAACGCCAATTCCGCGAACATTAGCCATGACAGCTTATGCTGACTTAGAAACGTCGGTGATTGATGAGTTACCGCCAG
GTCGAACACCAATCCAGACCGTCGCGATTCCAGACACCAAACGCGATGATATCGTCGAACGAGTGCGCAATGCCTGCTTA
AACGAAGGCAAACAAGCGTATTGGGTATGTACCTTGATTGATGAGTCCGAAGTCTTGGAGGCTCAAGCTGCTGCCGAAAC
TGCAGAAGAGCTGCAACGTAAACTGCCTGACGTAAAAATTGGTCTCGTGCACGGACGAATGAAGCCCGCTGAGAAGCAAG
CGGTGATGCAGGATTTCAAAGACAACAAGCTGCATTTACTGGTCGCAACGACAGTGATTGAAGTAGGCGTAGACGTACCC
AATTCCAGCCTGATGATCATCGAGAACCCAGAGCGTTTAGGTTTAGCTCAGTTGCACCAGCTTAGAGGTCGTGTTGGTCG
AGGTTCAGTGGCGAGCCATTGTGTGTTGCTGTATCACTCACCACTATCAAAAACCGCCCAAAAACGTTTAGGCGTATTAC
GAGAAAGCAACGACGGCTTCGTGATTGCACAGAAAGACTTAGAGATTCGTGGACCGGGTGAGCTTCTTGGTACCAAGCAA
ACTGGCTTGGCAGATTTTAAAATTGCCGACTTAGTGCGAGATCAGCGCTTAATTCCGGAAGTTCAACGCATTGCACGTTA
CATTCATGACAACTACCCGACGAATGCGACCGCAATTATTGATCGTTGGTTAGGCGAGCGTGACATTTATTCTAAGGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(272-433)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.554

96.97

0.481
  recG/mmsA Streptococcus pneumoniae R6

39.673

97.114

0.385
  recG/mmsA Streptococcus pneumoniae R36A

39.673

97.114

0.385
  recG Bacillus subtilis subsp. subtilis str. 168

39.362

94.949

0.374

Multiple sequence alignment