Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   C1N51_RS01490 Genome accession   NZ_CP026315
Coordinates   324907..327165 (-) Length   752 a.a.
NCBI ID   WP_103410092.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-90     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319907..332165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N51_RS01470 (C1N51_01470) kdsB 321193..321951 (-) 759 WP_038891570.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C1N51_RS01475 (C1N51_01475) - 321951..322130 (-) 180 WP_005378451.1 Trm112 family protein -
  C1N51_RS01480 (C1N51_01480) lpxK 322111..323118 (-) 1008 WP_103410091.1 tetraacyldisaccharide 4'-kinase -
  C1N51_RS01485 (C1N51_01485) msbA 323124..324875 (-) 1752 WP_005431688.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  C1N51_RS01490 (C1N51_01490) comEC 324907..327165 (-) 2259 WP_103410092.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C1N51_RS01495 (C1N51_01495) - 327174..327683 (+) 510 WP_005431694.1 DUF2062 domain-containing protein -
  C1N51_RS01500 (C1N51_01500) lolE 327886..329130 (-) 1245 WP_005431697.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  C1N51_RS01505 (C1N51_01505) lolD 329133..329840 (-) 708 WP_045397649.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  C1N51_RS01510 (C1N51_01510) lolC 329833..331041 (-) 1209 WP_038891563.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  C1N51_RS01515 (C1N51_01515) - 331306..331875 (+) 570 WP_038891579.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84089.30 Da        Isoelectric Point: 9.8179

>NTDB_id=225071 C1N51_RS01490 WP_103410092.1 324907..327165(-) (comEC) [Vibrio campbellii strain BoB-90]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGITARAVTPDDAKWLIRTHSSFRQQIITAVDSHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFQLAGMLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
MLVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVTLYDTGKAWNSGSIAQQVISPILHRRGFGTIDIFIISHADSD
HAGGRQYIEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=225071 C1N51_RS01490 WP_103410092.1 324907..327165(-) (comEC) [Vibrio campbellii strain BoB-90]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTACCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATAGTCATATTGCTGAGCTTGACCATTTCCCGTTAATCAGTGCATTAGCATTTAGTGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTTTGGGCTTTGTCATTCGGCTTCTATTCCCCAAGTTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCCTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTGCTTAAAGCGGCTTTGGTTCATTGGAGTCCTTGGCGAGTGTTACTACTCGCTGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTGGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTACTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTGTCCATTGCTTACAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTTCTTTTCAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTAGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTAGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATGCTAGTGACGGGTGTCGCCCTATTTTATGAGCGTACAACAAATTCTTGGCGAGTGGATGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGACGCTTTACGACACAGGCAAAGCTTGGAACTCAGGGAGCATCGCTC
AGCAAGTTATCTCTCCTATATTACATCGCAGAGGTTTTGGCACCATTGATATATTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTAGGCAGTATATAGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.739

100

0.977
  comEC Vibrio parahaemolyticus RIMD 2210633

66.223

100

0.662
  comEC Vibrio cholerae strain A1552

41.09

100

0.411

Multiple sequence alignment