Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RS_RS13860 Genome accession   NC_003295
Coordinates   2981856..2982356 (+) Length   166 a.a.
NCBI ID   WP_011002677.1    Uniprot ID   Q8XVQ9
Organism   Ralstonia pseudosolanacearum GMI1000     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2976856..2987356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS_RS13845 (RS00080) - 2977669..2980014 (-) 2346 WP_011002674.1 NADP-dependent malic enzyme -
  RS_RS13850 (RS00079) thiL 2980257..2981255 (+) 999 WP_011002675.1 thiamine-phosphate kinase -
  RS_RS13855 (RS00078) - 2981252..2981830 (+) 579 WP_016723757.1 phosphatidylglycerophosphatase A family protein -
  RS_RS13860 (RS00077) cinA 2981856..2982356 (+) 501 WP_011002677.1 CinA family protein Machinery gene
  RS_RS13865 (RS00075) - 2982383..2983611 (-) 1229 Protein_2786 cation diffusion facilitator family transporter -
  RS_RS13870 (RS00074) pyrF 2983646..2984461 (-) 816 WP_028860983.1 orotidine-5'-phosphate decarboxylase -
  RS_RS13875 (RS00073) corA 2984681..2985643 (+) 963 WP_011002681.1 magnesium/cobalt transporter CorA -
  RS_RS13880 (RS00072) - 2985681..2986823 (-) 1143 WP_011002682.1 pectate lyase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17466.92 Da        Isoelectric Point: 6.9696

>NTDB_id=22505 RS_RS13860 WP_011002677.1 2981856..2982356(+) (cinA) [Ralstonia pseudosolanacearum GMI1000]
MAESRALAQLAELVGDTLHKRSLMVATAESCTAGLVGAAITDIPGASAWFERGFVTYSNEAKSQMLGVPATLIREHGAVS
EPVAHAMAEGAVLNSRAQVALAVTGVAGPTGGTPDKPVGMVCFGWSNRLQTRVETRHFKGDRKQIRLQAAEHALRGLLDF
LDAAES

Nucleotide


Download         Length: 501 bp        

>NTDB_id=22505 RS_RS13860 WP_011002677.1 2981856..2982356(+) (cinA) [Ralstonia pseudosolanacearum GMI1000]
ATGGCTGAATCCCGCGCGCTGGCGCAACTGGCCGAACTGGTGGGCGACACGCTGCACAAGCGCAGTCTGATGGTGGCGAC
GGCGGAATCGTGCACCGCCGGGCTCGTCGGCGCGGCCATCACCGACATCCCGGGCGCGTCCGCGTGGTTCGAGCGCGGCT
TCGTCACGTATTCGAACGAAGCGAAATCGCAGATGCTGGGCGTGCCGGCCACGCTGATCCGCGAGCATGGCGCGGTGAGC
GAGCCGGTGGCGCACGCCATGGCCGAAGGCGCCGTGCTCAACAGCCGCGCACAGGTGGCGCTGGCCGTGACGGGCGTGGC
GGGACCGACCGGCGGCACACCCGACAAACCCGTCGGCATGGTGTGCTTCGGCTGGAGCAACCGCCTGCAGACGCGGGTGG
AAACCCGCCACTTCAAGGGCGACCGCAAGCAGATCCGGCTACAGGCCGCCGAGCATGCGCTGCGCGGCCTGCTGGACTTC
CTAGACGCCGCGGAAAGCTAG

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(9-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XVQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae R36A

40.816

88.554

0.361
  cinA Streptococcus pneumoniae Rx1

40.816

88.554

0.361
  cinA Streptococcus pneumoniae R6

40.816

88.554

0.361
  cinA Streptococcus pneumoniae D39

40.816

88.554

0.361