Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   B7P03_RS03880 Genome accession   NZ_CP020618
Coordinates   815923..816795 (+) Length   290 a.a.
NCBI ID   WP_002448769.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. hominis strain K1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 810923..821795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7P03_RS03860 (B7P03_03850) ylqF 811809..812693 (+) 885 WP_087436530.1 ribosome biogenesis GTPase YlqF -
  B7P03_RS03865 (B7P03_03855) - 812677..813444 (+) 768 WP_087436531.1 ribonuclease HII -
  B7P03_RS03870 (B7P03_03860) sucC 813572..814738 (+) 1167 WP_002448800.1 ADP-forming succinate--CoA ligase subunit beta -
  B7P03_RS03875 (B7P03_03865) sucD 814760..815665 (+) 906 WP_002448725.1 succinate--CoA ligase subunit alpha -
  B7P03_RS03880 (B7P03_03870) dprA 815923..816795 (+) 873 WP_002448769.1 DNA-processing protein DprA Machinery gene
  B7P03_RS03885 (B7P03_03875) topA 816934..819003 (+) 2070 WP_087436532.1 type I DNA topoisomerase -
  B7P03_RS03890 (B7P03_03880) trmFO 819028..820335 (+) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B7P03_RS03895 (B7P03_03885) xerC 820441..821334 (+) 894 WP_087436533.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33521.62 Da        Isoelectric Point: 8.2454

>NTDB_id=225030 B7P03_RS03880 WP_002448769.1 815923..816795(+) (dprA) [Staphylococcus hominis subsp. hominis strain K1]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYCFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=225030 B7P03_RS03880 WP_002448769.1 815923..816795(+) (dprA) [Staphylococcus hominis subsp. hominis strain K1]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACACATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGGGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATTGTTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.77

100

0.369

Multiple sequence alignment