Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   B6V88_RS03675 Genome accession   NZ_CP020615
Coordinates   794062..794757 (-) Length   231 a.a.
NCBI ID   WP_102010556.1    Uniprot ID   A0A098GID9
Organism   Legionella micdadei strain NZ2016     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 789062..799757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6V88_RS03650 (B6V88_03650) prmC 789100..789939 (-) 840 WP_045099944.1 peptide chain release factor N(5)-glutamine methyltransferase -
  B6V88_RS03655 (B6V88_03655) prfA 789932..791020 (-) 1089 WP_083011936.1 peptide chain release factor 1 -
  B6V88_RS03660 (B6V88_03660) hemA 791004..792278 (-) 1275 WP_045099942.1 glutamyl-tRNA reductase -
  B6V88_RS03665 (B6V88_03665) - 792646..792930 (+) 285 WP_045099941.1 hypothetical protein -
  B6V88_RS03670 (B6V88_03670) - 792989..794065 (+) 1077 WP_083011938.1 site-2 protease family protein -
  B6V88_RS03675 (B6V88_03675) comFC 794062..794757 (-) 696 WP_102010556.1 ComF family protein Machinery gene
  B6V88_RS03680 (B6V88_03680) bioC 794931..795788 (+) 858 WP_045100738.1 malonyl-ACP O-methyltransferase BioC -
  B6V88_RS03685 (B6V88_03685) dacB 795878..797308 (+) 1431 WP_045099939.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  B6V88_RS03690 (B6V88_03690) phhA 797392..798210 (+) 819 WP_045099938.1 phenylalanine 4-monooxygenase -
  B6V88_RS03695 (B6V88_03695) letA 798358..799023 (+) 666 WP_045099937.1 two-component system response regulator LetA Regulator

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26529.19 Da        Isoelectric Point: 9.6440

>NTDB_id=224984 B6V88_RS03675 WP_102010556.1 794062..794757(-) (comFC) [Legionella micdadei strain NZ2016]
MRQKITSITQLLRLPSVCVLCNQYHDQPFPVCHPCTRLFKKIGPACRYCAHPLPDEKYLVCGICVKEKPTIDNTITAYRF
EEPLRTLLHGFKYHEAFYLGGFLAKLILEALANRPITTECLIPVPLHPKRLRQRGFNQAVELSRILSKKLQIPCEPNLCK
RIVHTDPQVNLDRKQRKQNVRGAFQSKLTHYQHITLVDDLLTTGSTANELARVLKQQGATRIDLWCCARAF

Nucleotide


Download         Length: 696 bp        

>NTDB_id=224984 B6V88_RS03675 WP_102010556.1 794062..794757(-) (comFC) [Legionella micdadei strain NZ2016]
GTGCGCCAGAAAATCACCAGTATAACACAGTTGTTGCGTTTGCCTTCGGTCTGTGTCCTTTGTAACCAATACCATGATCA
ACCCTTTCCTGTTTGTCATCCATGCACACGCTTGTTTAAGAAAATCGGACCTGCATGCCGTTATTGCGCCCATCCTTTGC
CGGATGAAAAATATTTAGTTTGCGGGATTTGTGTAAAAGAAAAACCAACCATTGATAATACAATCACAGCTTATCGGTTC
GAAGAACCTTTACGCACTTTATTGCATGGATTTAAATATCATGAAGCATTTTACCTGGGTGGGTTTTTGGCCAAATTAAT
ATTAGAAGCATTGGCAAATCGACCGATCACCACAGAATGCCTCATTCCTGTCCCCTTGCATCCTAAGCGCCTTAGGCAGA
GAGGCTTCAATCAGGCAGTTGAACTCTCTAGAATTCTATCTAAAAAATTACAGATACCTTGTGAGCCCAATCTTTGTAAA
CGCATTGTCCATACCGATCCGCAAGTTAATTTAGATAGAAAACAACGAAAACAAAACGTGCGCGGTGCTTTTCAAAGTAA
ATTGACTCACTATCAACACATTACTTTGGTGGATGATTTATTGACAACTGGGAGCACAGCTAATGAATTGGCACGTGTTC
TTAAACAACAAGGCGCCACTCGAATTGATCTTTGGTGTTGTGCGCGGGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098GID9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

53.913

99.567

0.537
  comFC Legionella pneumophila strain ERS1305867

53.646

83.117

0.446

Multiple sequence alignment