Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   B7L35_RS13985 Genome accession   NZ_CP020598
Coordinates   2891010..2891483 (+) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WKA02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2886010..2896483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L35_RS13965 (B7L35_13965) - 2886473..2888578 (-) 2106 WP_020753492.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  B7L35_RS18850 - 2888618..2888748 (-) 131 Protein_2733 hypothetical protein -
  B7L35_RS13970 (B7L35_13970) rpoZ 2888787..2889065 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  B7L35_RS13975 (B7L35_13975) gmk 2889138..2889767 (-) 630 WP_000015936.1 guanylate kinase -
  B7L35_RS13980 (B7L35_13980) ispH 2889890..2890840 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  B7L35_RS13985 (B7L35_13985) fimU 2891010..2891483 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  B7L35_RS13990 (B7L35_13990) pilV 2891477..2892037 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  B7L35_RS13995 (B7L35_13995) pilW 2892038..2893039 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  B7L35_RS14000 (B7L35_14000) pilX 2893036..2893854 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=224850 B7L35_RS13985 WP_001214068.1 2891010..2891483(+) (fimU) [Acinetobacter baumannii strain WKA02]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=224850 B7L35_RS13985 WP_001214068.1 2891010..2891483(+) (fimU) [Acinetobacter baumannii strain WKA02]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment