Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   B7L35_RS13875 Genome accession   NZ_CP020598
Coordinates   2864954..2865694 (+) Length   246 a.a.
NCBI ID   WP_000076097.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WKA02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2859954..2870694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L35_RS13860 (B7L35_13860) ponA 2860542..2863097 (-) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  B7L35_RS13865 (B7L35_13865) pilM 2863258..2864316 (+) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  B7L35_RS13870 (B7L35_13870) pilN 2864316..2864957 (+) 642 WP_031958555.1 PilN domain-containing protein Machinery gene
  B7L35_RS13875 (B7L35_13875) pilO 2864954..2865694 (+) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  B7L35_RS13880 (B7L35_13880) pilP 2865705..2866232 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  B7L35_RS13885 (B7L35_13885) pilQ 2866295..2868460 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  B7L35_RS13890 (B7L35_13890) aroK 2868472..2869041 (+) 570 WP_000643712.1 shikimate kinase AroK -
  B7L35_RS13895 (B7L35_13895) aroB 2869070..2870152 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27785.55 Da        Isoelectric Point: 4.8357

>NTDB_id=224846 B7L35_RS13875 WP_000076097.1 2864954..2865694(+) (pilO) [Acinetobacter baumannii strain WKA02]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGFFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=224846 B7L35_RS13875 WP_000076097.1 2864954..2865694(+) (pilO) [Acinetobacter baumannii strain WKA02]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTTTTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment