Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   B7L35_RS13870 Genome accession   NZ_CP020598
Coordinates   2864316..2864957 (+) Length   213 a.a.
NCBI ID   WP_031958555.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WKA02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2859316..2869957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7L35_RS13850 (B7L35_13850) - 2859365..2859697 (+) 333 WP_000169603.1 hypothetical protein -
  B7L35_RS13855 (B7L35_13855) - 2859700..2860524 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  B7L35_RS13860 (B7L35_13860) ponA 2860542..2863097 (-) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  B7L35_RS13865 (B7L35_13865) pilM 2863258..2864316 (+) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  B7L35_RS13870 (B7L35_13870) pilN 2864316..2864957 (+) 642 WP_031958555.1 PilN domain-containing protein Machinery gene
  B7L35_RS13875 (B7L35_13875) pilO 2864954..2865694 (+) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  B7L35_RS13880 (B7L35_13880) pilP 2865705..2866232 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  B7L35_RS13885 (B7L35_13885) pilQ 2866295..2868460 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  B7L35_RS13890 (B7L35_13890) aroK 2868472..2869041 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24047.41 Da        Isoelectric Point: 5.4028

>NTDB_id=224845 B7L35_RS13870 WP_031958555.1 2864316..2864957(+) (pilN) [Acinetobacter baumannii strain WKA02]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLAEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=224845 B7L35_RS13870 WP_031958555.1 2864316..2864957(+) (pilN) [Acinetobacter baumannii strain WKA02]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGCGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment