Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GBS_RS04115 Genome accession   NC_004368
Coordinates   761100..761909 (+) Length   269 a.a.
NCBI ID   WP_001289499.1    Uniprot ID   A0AAD2WV74
Organism   Streptococcus agalactiae NEM316     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 756100..766909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS04085 (gbs0737) - 756104..756382 (+) 279 WP_000131727.1 hypothetical protein -
  GBS_RS04090 (gbs0738) - 756395..756778 (+) 384 WP_000323828.1 replication initiator protein A -
  GBS_RS04095 (gbs0739) - 756783..757094 (+) 312 WP_000583310.1 hypothetical protein -
  GBS_RS04100 (gbs0740) - 757228..758556 (+) 1329 WP_000151682.1 ISLre2 family transposase -
  GBS_RS04105 (gbs0741) vicR 759044..759754 (+) 711 WP_000722052.1 response regulator YycF Regulator
  GBS_RS04110 (gbs0742) vicK 759747..761096 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GBS_RS04115 (gbs0743) vicX 761100..761909 (+) 810 WP_001289499.1 MBL fold metallo-hydrolase Regulator
  GBS_RS04120 (gbs0744) - 761912..762280 (+) 369 WP_000719384.1 YbaN family protein -
  GBS_RS04125 (gbs0745) rnc 762456..763142 (+) 687 WP_000661526.1 ribonuclease III -
  GBS_RS04130 (gbs0746) smc 763150..766689 (+) 3540 WP_000478794.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30246.18 Da        Isoelectric Point: 6.0756

>NTDB_id=22459 GBS_RS04115 WP_001289499.1 761100..761909(+) (vicX) [Streptococcus agalactiae NEM316]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGTTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=22459 GBS_RS04115 WP_001289499.1 761100..761909(+) (vicX) [Streptococcus agalactiae NEM316]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATCGATGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAGCCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCTAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTACAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCCCCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.208

100

0.762

Multiple sequence alignment