Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SMU_RS02015 Genome accession   NC_004350
Coordinates   387570..388604 (+) Length   344 a.a.
NCBI ID   WP_002279713.1    Uniprot ID   Q8DVQ6
Organism   Streptococcus mutans UA159     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 382570..393604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMU_RS01990 (SMU.409) tsaE 383904..384347 (+) 444 WP_002272923.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SMU_RS01995 (SMU.410) brpA 384678..385898 (+) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  SMU_RS02000 (SMU.411c) - 386068..386361 (-) 294 WP_002268777.1 hypothetical protein -
  SMU_RS02005 (SMU.412c) - 386358..386777 (-) 420 WP_002262609.1 HIT family protein -
  SMU_RS02010 (SMU.413) pptA 386842..387567 (+) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  SMU_RS02015 (SMU.414) pptB 387570..388604 (+) 1035 WP_002279713.1 ABC transporter permease Regulator
  SMU_RS02020 (SMU.415) ccrZ 388663..389445 (+) 783 WP_002262606.1 cell cycle regulator CcrZ -
  SMU_RS02025 (SMU.416) trmB 389455..390090 (+) 636 WP_002262605.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SMU_RS02035 (SMU.417) rimP 390362..390853 (+) 492 WP_002262604.1 ribosome maturation factor RimP -
  SMU_RS02040 (SMU.418) nusA 390889..392082 (+) 1194 WP_002262603.1 transcription termination factor NusA -
  SMU_RS02045 (SMU.419) rnpM 392100..392396 (+) 297 WP_002263922.1 RNase P modulator RnpM -
  SMU_RS02050 (SMU.420) - 392389..392691 (+) 303 WP_002262601.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40572.02 Da        Isoelectric Point: 10.6624

>NTDB_id=22416 SMU_RS02015 WP_002279713.1 387570..388604(+) (pptB) [Streptococcus mutans UA159]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKETHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDHQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=22416 SMU_RS02015 WP_002279713.1 387570..388604(+) (pptB) [Streptococcus mutans UA159]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGCCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAAGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAGGGATTAATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAACGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGTAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATCATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DVQ6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.163

100

0.512

  pptB Streptococcus thermophilus LMD-9

50.581

100

0.506


Multiple sequence alignment