Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SMU_RS02010 Genome accession   NC_004350
Coordinates   386842..387567 (+) Length   241 a.a.
NCBI ID   WP_002262608.1    Uniprot ID   A0AAX1K0Q1
Organism   Streptococcus mutans UA159     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 381842..392567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMU_RS01985 (SMU.408) - 382345..383775 (+) 1431 WP_002262613.1 NCS2 family permease -
  SMU_RS01990 (SMU.409) tsaE 383904..384347 (+) 444 WP_002272923.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SMU_RS01995 (SMU.410) brpA 384678..385898 (+) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  SMU_RS02000 (SMU.411c) - 386068..386361 (-) 294 WP_002268777.1 hypothetical protein -
  SMU_RS02005 (SMU.412c) - 386358..386777 (-) 420 WP_002262609.1 HIT family protein -
  SMU_RS02010 (SMU.413) pptA 386842..387567 (+) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  SMU_RS02015 (SMU.414) pptB 387570..388604 (+) 1035 WP_002279713.1 ABC transporter permease Regulator
  SMU_RS02020 (SMU.415) ccrZ 388663..389445 (+) 783 WP_002262606.1 cell cycle regulator CcrZ -
  SMU_RS02025 (SMU.416) trmB 389455..390090 (+) 636 WP_002262605.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SMU_RS02035 (SMU.417) rimP 390362..390853 (+) 492 WP_002262604.1 ribosome maturation factor RimP -
  SMU_RS02040 (SMU.418) nusA 390889..392082 (+) 1194 WP_002262603.1 transcription termination factor NusA -
  SMU_RS02045 (SMU.419) rnpM 392100..392396 (+) 297 WP_002263922.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26686.26 Da        Isoelectric Point: 4.9888

>NTDB_id=22415 SMU_RS02010 WP_002262608.1 386842..387567(+) (pptA) [Streptococcus mutans UA159]
MLKIENLTGGYVNIPVLKNISFEVADGELVGLIGLNGAGKSTTINEIIGLLQPYEGKISIDGLTLADQEMAYRKKIGFIP
ETPSLYEELTLKEHLEMIAMAYDIKVEAALARAQKLLELFRLEDKLDWFPIHFSKGMKQKVMIICAFIIDPSLFIVDEPF
LGLDPVAISDLTQLLAAEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQIRAQGSLADLRMTFGNAQASLNDIYMTLTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=22415 SMU_RS02010 WP_002262608.1 386842..387567(+) (pptA) [Streptococcus mutans UA159]
ATGTTAAAAATAGAAAATTTGACCGGTGGTTACGTCAACATTCCTGTCTTGAAAAATATCAGTTTTGAGGTTGCTGATGG
TGAGTTGGTCGGGCTCATAGGCCTCAATGGTGCAGGAAAATCAACAACTATCAATGAAATTATTGGACTTTTGCAGCCTT
ATGAAGGCAAAATCAGTATTGATGGACTGACGCTTGCAGATCAAGAAATGGCTTATCGAAAGAAAATTGGGTTTATTCCA
GAAACGCCTAGCCTTTACGAAGAATTAACCTTAAAAGAGCACTTGGAGATGATAGCCATGGCTTATGATATTAAAGTGGA
AGCAGCTTTGGCGCGTGCGCAAAAACTGCTGGAACTTTTTAGATTAGAAGATAAACTGGATTGGTTTCCTATTCATTTTT
CCAAAGGAATGAAACAAAAGGTCATGATTATCTGTGCCTTTATCATTGATCCGAGTCTTTTTATTGTTGATGAGCCTTTC
TTGGGATTGGATCCTGTTGCCATTTCAGATTTGACTCAGCTTTTGGCAGCAGAAAAGGCTAAGGGAAAATCCATTTTGAT
GTCAACTCATGTTTTGGATTCTGCTGAAAAGATGTGTGATCGCTTTGTTATTTTACATCATGGACAAATCCGAGCTCAAG
GAAGTCTCGCTGATTTACGAATGACTTTTGGAAATGCACAAGCCAGCCTTAACGATATCTATATGACTTTGACTAAAGAG
GGTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

76.987

99.17

0.763
  pptA Streptococcus salivarius strain HSISS4

76.569

99.17

0.759

Multiple sequence alignment