Detailed information NTG0224130

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: B7D75_RS23305
• Genome accession: NZ_CP020560
• Coordinates: 4921428..4922300 (+)
• Length: 290 a.a.
• NCBI ID: WP_107114467.1
• Uniprot ID: -
• Organism: Pseudomonas paraeruginosa strain Cr1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4916428..4927300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B7D75_RS23290 (B7D75_23305)	-	4917812..4918276 (-)	465	WP_058175466.1	pilin	-
B7D75_RS23295 (B7D75_23310)	pilB	4918507..4920206 (+)	1700	Protein_4535	type IV-A pilus assembly ATPase PilB	-
B7D75_RS23300 (B7D75_23315)	pilC	4920210..4921427 (+)	1218	WP_107114466.1	type II secretion system F family protein	Machinery gene
B7D75_RS23305 (B7D75_23320)	pilD	4921428..4922300 (+)	873	WP_107114467.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
B7D75_RS23310 (B7D75_23325)	coaE	4922297..4922908 (+)	612	WP_107114468.1	dephospho-CoA kinase	-
B7D75_RS23315 (B7D75_23330)	yacG	4922905..4923105 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
B7D75_RS23320 (B7D75_23335)	-	4923143..4923352 (-)	210	WP_033998211.1	hypothetical protein	-
B7D75_RS23325 (B7D75_23340)	-	4923458..4924147 (-)	690	WP_012077298.1	energy-coupling factor ABC transporter permease	-
B7D75_RS23330 (B7D75_23345)	-	4924144..4924614 (-)	471	WP_107114469.1	FAD/FMN-containing dehydrogenase	-
B7D75_RS23335 (B7D75_23350)	-	4924611..4925036 (-)	426	WP_003152776.1	GNAT family N-acetyltransferase	-
B7D75_RS23340 (B7D75_23355)	-	4925168..4925797 (+)	630	WP_033998217.1	DUF1780 domain-containing protein	-
B7D75_RS23345 (B7D75_23360)	-	4925794..4926234 (+)	441	WP_107114470.1	MOSC domain-containing protein	-
B7D75_RS23350 (B7D75_23365)	-	4926269..4926439 (+)	171	WP_003152781.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31738.70 Da
• Isoelectric Point: 7.3859

>NTDB_id=224130 B7D75_RS23305 WP_107114467.1 4921428..4922300(+) (pilD) [Pseudomonas paraeruginosa strain Cr1]
MTLLDYLASHTLAFVLCAIVLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLQPEPEPAIYNLVLPNSSCPHCGHEIR
PWENIPVLSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFNWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AILGVVMLRLRNAASGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=224130 B7D75_RS23305 WP_107114467.1 4921428..4922300(+) (pilD) [Pseudomonas paraeruginosa strain Cr1]
ATGACCCTCCTCGACTACCTGGCCAGCCATACGCTGGCCTTTGTCTTGTGCGCCATCGTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCACCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAGGCGCTCGGGC
TGCAGCCGGAGCCTGAACCGGCGATCTACAACCTGGTCCTGCCGAACTCCTCGTGCCCGCATTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGGTGCTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCACTTCGGTTTCAATTGGCAGGCCGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGCTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGACGCGCTGTTCGGCGCGGT
GTTCGGCTACCTCAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCCATCCTCGGGGTGGTCATGCTGCGCCTGCGCAACGCCGCAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATTTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.364	94.828	0.534
pilD	Vibrio campbellii strain DS40M4	54.579	94.138	0.514
pilD	Acinetobacter baumannii D1279779	50.177	97.586	0.49
pilD	Acinetobacter nosocomialis M2	49.47	97.586	0.483
pilD	Neisseria gonorrhoeae MS11	50.943	91.379	0.466