Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   B5S57_RS07615 Genome accession   NZ_CP020534
Coordinates   444718..445350 (-) Length   210 a.a.
NCBI ID   WP_107489901.1    Uniprot ID   -
Organism   Vibrio anguillarum strain 425     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 439718..450350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5S57_RS07595 (B5S57_07485) - 439965..441176 (+) 1212 WP_041769032.1 aspartate aminotransferase family protein -
  B5S57_RS07600 (B5S57_07490) astA 441243..442262 (+) 1020 WP_029190038.1 arginine N-succinyltransferase -
  B5S57_RS07605 (B5S57_07495) astD 442294..443751 (+) 1458 WP_013855905.1 succinylglutamate-semialdehyde dehydrogenase -
  B5S57_RS07610 (B5S57_07500) - 443820..444614 (+) 795 WP_013855906.1 DUF1338 domain-containing protein -
  B5S57_RS07615 (B5S57_07505) crp 444718..445350 (-) 633 WP_107489901.1 cAMP-activated global transcriptional regulator CRP Regulator
  B5S57_RS07620 (B5S57_07510) - 445592..446461 (-) 870 WP_010318742.1 phosphoribulokinase -
  B5S57_RS07625 (B5S57_07515) - 446544..446750 (-) 207 WP_010318743.1 YheU family protein -
  B5S57_RS07630 (B5S57_07520) - 446812..447819 (-) 1008 WP_013855907.1 hydrolase -
  B5S57_RS07635 (B5S57_07525) - 447876..448355 (-) 480 WP_013855908.1 TIGR02444 family protein -
  B5S57_RS07640 (B5S57_07530) - 448357..450276 (-) 1920 WP_013855909.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23647.49 Da        Isoelectric Point: 8.2772

>NTDB_id=223947 B5S57_RS07615 WP_107489901.1 444718..445350(-) (crp) [Vibrio anguillarum strain 425]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKVEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQISRRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=223947 B5S57_RS07615 WP_107489901.1 444718..445350(-) (crp) [Vibrio anguillarum strain 425]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAATACCCATCGAA
AAGCACGTTGATTCATGCGGGCGAAAAAGCAGAGACGCTGTACTACATCGTCAAAGGCTCGGTAGCGGTATTGATTAAAG
TCGAAGAAGGTAAAGAGATGATCCTCTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCGGAAATTTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTGAACCCAGACATCTTAATGCGTCTGTCTGCACAAATTTCTCGACGTCTACAAGTCACCAGTCAAAAAGTGGGTG
ATTTAGCCTTCCTAGACGTGACGGGTCGTATTGCACAAACGCTACTCAACCTAGCGAAACAACCTGATGCAATGACGCAC
CCAGATGGCATGCAAATCAAAATCACCCGTCAAGAGATCGGCCAAATTGTAGGCTGTTCTCGTGAAACTGTGGGACGTAT
TTTGAAGATGCTCGAAGAGCAGAATTTAATTTCTGCCCACGGTAAAACTATCGTGGTGTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

96.667

100

0.967
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

47.596

99.048

0.471

Multiple sequence alignment