Detailed information NTG0223949

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: B5S57_RS11240
• Genome accession: NZ_CP020534
• Coordinates: 1195657..1197900 (+)
• Length: 747 a.a.
• NCBI ID: WP_029189791.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain 425
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1190657..1202900

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B5S57_RS11215 (B5S57_11095)	-	1191135..1191704 (-)	570	WP_013856528.1	hypothetical protein	-
B5S57_RS11220 (B5S57_11100)	lolC	1191870..1193078 (+)	1209	WP_013856529.1	lipoprotein-releasing ABC transporter permease subunit LolC	-
B5S57_RS11225 (B5S57_11105)	lolD	1193071..1193757 (+)	687	WP_013856530.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
B5S57_RS11230 (B5S57_11110)	lolE	1193758..1195002 (+)	1245	WP_013856531.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
B5S57_RS11235 (B5S57_11115)	-	1195141..1195650 (-)	510	WP_010319231.1	DUF2062 domain-containing protein	-
B5S57_RS11240 (B5S57_11120)	comEC	1195657..1197900 (+)	2244	WP_029189791.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
B5S57_RS11245 (B5S57_11125)	msbA	1197933..1199681 (+)	1749	WP_013856533.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
B5S57_RS11250 (B5S57_11130)	lpxK	1199685..1200692 (+)	1008	WP_013856534.1	tetraacyldisaccharide 4'-kinase	-
B5S57_RS11255 (B5S57_11135)	-	1200673..1200852 (+)	180	WP_013856535.1	Trm112 family protein	-
B5S57_RS11260 (B5S57_11140)	kdsB	1200852..1201604 (+)	753	WP_013856536.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
B5S57_RS11265 (B5S57_11145)	-	1201647..1202165 (-)	519	WP_013856537.1	cytochrome b	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 83533.44 Da
• Isoelectric Point: 9.4397

>NTDB_id=223949 B5S57_RS11240 WP_029189791.1 1195657..1197900(+) (comEC) [Vibrio anguillarum strain 425]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWIMPLFAILILSVVYRKLRFLSGVTMALMVIVISGNLLREQSNTIFQTGS
DITINGQVNSFFRQITHGYEGTISIRSINGQTLGIFLRPKVRLIAPLPLKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESLPEWRAQWYQKIKTWLADDPNLGILMALTFGERSDISTAQWQALRDSGLIHLVAISGLHI
GIAFGFGYSLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTNRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALVCTFLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGAVLALLSSALLLFVFSPLISRFALAVYSLIVM
VSWLTIPIKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIRIFDQNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALISKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISVIFG
MQNYQVSSLRISRSQAWYRQMLRNEVE

Nucleotide

• Length: 2244 bp

>NTDB_id=223949 B5S57_RS11240 WP_029189791.1 1195657..1197900(+) (comEC) [Vibrio anguillarum strain 425]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACCGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGATTATGCCTCTATTCGCCATTCTTATACTCTCTGTCGTTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAATGGTCATTGTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGACAGGTTAACAGCTTTTTTAGACAAATTACTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATAGCTCCTTTACCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATTACCAGAATGGCGAGCGCA
ATGGTACCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGCAAGCATTACGAGACAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATAGCCTTGGGCTCGTATTGATGCGTTTGCATCATCGCATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCGCTCATCATGTGTT
TGCTCAATGTGGCGATGATTGTTCTCAATGTCCGTATCAATACTTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTCATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCAGTGGTGTTCTACCAACTTTC
TCTACCTCAAACTAATCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CCGCTTATTTTTTCGGTGGGGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTGGCTTTAGTCTGTACGTTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCCAA
ATTGCTCATTCCAGTTGATTGGTCAATACATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGGGCTGTTTTGGCTCTGT
TGAGCAGTGCTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTTGCGGTTTACAGCCTCATTGTGATG
GTTTCTTGGCTCACCATTCCGATAAAAACAGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTAGCGGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAAGGTGGTGATCACATCCAAGCAACAGTTGCCC
CCGTGTTAAACAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
CGAACAATGGCAGTGGCAACAACTCTCTTTTGATGTTATCTGGCCACCAAAAACTGTAGCGCGGGCTTACAATCCTCACT
CTTGTGTGATTCGAATCTTTGACCAAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCTATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCACACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTAGTAAGGTGAACCCTGAAGTCGCTATTGCCTCGCTCGCTAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAACAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCGTTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGGCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterProScan.

• Domain of unknown function (DUF4131) (DUF4131) (24-172)

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-681)

• Competence protein (Competence) (208-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio cholerae strain A1552	51.872	100	0.519
comEC	Vibrio parahaemolyticus RIMD 2210633	43.931	100	0.446
comEC	Vibrio campbellii strain DS40M4	43.857	100	0.444