Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   RK79_RS11840 Genome accession   NZ_CP026067
Coordinates   2343953..2344942 (-) Length   329 a.a.
NCBI ID   WP_047213540.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_21     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2338953..2349942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK79_RS11825 (RK79_011825) acsA 2340154..2341860 (-) 1707 WP_000862101.1 acetate--CoA ligase -
  RK79_RS11830 (RK79_011830) - 2342029..2342661 (+) 633 WP_001015992.1 hypothetical protein -
  RK79_RS11835 (RK79_011835) - 2342686..2343855 (+) 1170 WP_001184001.1 acetoin utilization protein AcuC -
  RK79_RS11840 (RK79_011840) ccpA 2343953..2344942 (-) 990 WP_047213540.1 catabolite control protein A Regulator
  RK79_RS11845 (RK79_011845) - 2345015..2345128 (-) 114 WP_001803513.1 hypothetical protein -
  RK79_RS11850 (RK79_011850) - 2345482..2346573 (-) 1092 WP_000066378.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  RK79_RS11855 (RK79_011855) - 2347028..2347111 (-) 84 WP_031789490.1 hypothetical protein -
  RK79_RS11860 (RK79_011860) - 2347267..2348631 (-) 1365 WP_046463141.1 hypothetical protein -
  RK79_RS11865 (RK79_011865) - 2348705..2349196 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35988.17 Da        Isoelectric Point: 5.7655

>NTDB_id=223468 RK79_RS11840 WP_047213540.1 2343953..2344942(-) (ccpA) [Staphylococcus aureus strain FDAARGOS_21]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKVEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=223468 RK79_RS11840 WP_047213540.1 2343953..2344942(-) (ccpA) [Staphylococcus aureus strain FDAARGOS_21]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGCAGGTTTAACTGAAGTGTTAAATAAAAATGGCCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGGTAGAAGAACCAAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(4-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

48.182

100

0.483
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462