Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   B4U56_RS04280 Genome accession   NZ_CP020463
Coordinates   867512..868228 (-) Length   238 a.a.
NCBI ID   WP_001829999.1    Uniprot ID   C0LF82
Organism   Staphylococcus epidermidis strain 1457     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 862512..873228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U56_RS04260 (B4U56_04255) - 863793..864746 (+) 954 WP_032606590.1 LacI family DNA-binding transcriptional regulator -
  B4U56_RS04270 (B4U56_04265) - 865006..866478 (+) 1473 WP_080280829.1 sucrose-6-phosphate hydrolase -
  B4U56_RS04275 (B4U56_04270) - 866485..867444 (+) 960 WP_002468351.1 carbohydrate kinase family protein -
  B4U56_RS04280 (B4U56_04275) agrA 867512..868228 (-) 717 WP_001829999.1 quorum-sensing response regulator AgrA Regulator
  B4U56_RS04285 (B4U56_04280) agrC 868245..869534 (-) 1290 WP_032606587.1 quorum-sensing sensor histidine kinase AgrC -
  B4U56_RS04290 (B4U56_04285) agrD 869559..869699 (-) 141 WP_002447513.1 cyclic lactone autoinducer peptide AgrD -
  B4U56_RS04295 (B4U56_04290) - 869705..870268 (-) 564 WP_002457915.1 accessory gene regulator AgrB -
  B4U56_RS04300 (B4U56_04295) hld 870585..870662 (+) 78 WP_002494082.1 delta-hemolysin -
  B4U56_RS04305 (B4U56_04300) - 871043..871828 (-) 786 WP_032606585.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27936.97 Da        Isoelectric Point: 5.6250

>NTDB_id=223386 B4U56_RS04280 WP_001829999.1 867512..868228(-) (agrA) [Staphylococcus epidermidis strain 1457]
MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELALATNDPYEVLEQSKELNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=223386 B4U56_RS04280 WP_001829999.1 867512..868228(-) (agrA) [Staphylococcus epidermidis strain 1457]
ATGAAAATTTTTGTTTGTGAAGATGACCAAAGACAAAGAGAACATATGGTATCAATCATTAAAAACTACATAATGATTGA
AGAAAAGCCAATGGAGTTAGCTTTAGCAACAAATGATCCTTATGAGGTCTTAGAGCAATCAAAAGAACTTAATGACATTG
GTTGTTACTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAATTAGCCAGTGAAATTCGTAAACATGATCCT
GTTGGTAATATTATATTTGTAACCAGTCACAGTGAGCTGACTTATTTGACGTTTGTTTATAAAGTGGCTGCTATGGATTT
TATTTTTAAAGATGATCCATCTGAATTAAAAATGAGAATCATAGATTGTCTCGAAACAGCACATACACGACTCAAATTAT
TATCAAAAGAAAGTAATGTAGATACGATTGAGTTAAAGCGGGGAAGTAATTCAGTATACGTTCAATATGATGATATTATG
TTTTTTGAATCATCTACGAAATCTCATAGGCTCATTGCACATCTTGATAATCGACAAATTGAATTTTATGGAAATTTAAA
GGAATTAGCACAGCTTGATGAACGTTTCTTTAGATGTCATAACAGTTTTGTGATAAACAGGCATAATATTGAATCTATTG
ACTCAAAAGAACGTATTGTTTACTTTAAGAATGGCGAAAATTGTTTCGCTTCAGTACGTAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0LF82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878
  comE/comE2 Streptococcus gordonii strain NCTC7865

35.178

100

0.374
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

35.178

100

0.374

Multiple sequence alignment