Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   RK78_RS12160 Genome accession   NZ_CP026066
Coordinates   2417231..2418220 (-) Length   329 a.a.
NCBI ID   WP_000219068.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_20     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2412231..2423220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK78_RS12145 (RK78_012145) acsA 2413432..2415138 (-) 1707 WP_000862084.1 acetate--CoA ligase -
  RK78_RS12150 (RK78_012150) - 2415307..2415939 (+) 633 WP_001015997.1 hypothetical protein -
  RK78_RS12155 (RK78_012155) - 2415964..2417133 (+) 1170 WP_001183986.1 acetoin utilization protein AcuC -
  RK78_RS12160 (RK78_012160) ccpA 2417231..2418220 (-) 990 WP_000219068.1 catabolite control protein A Regulator
  RK78_RS12165 (RK78_012165) - 2418293..2418406 (-) 114 WP_031883258.1 hypothetical protein -
  RK78_RS12170 (RK78_012170) - 2418760..2419851 (-) 1092 WP_000066379.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  RK78_RS12175 (RK78_012175) - 2420306..2420389 (-) 84 WP_016186897.1 hypothetical protein -
  RK78_RS12180 (RK78_012180) - 2420545..2421735 (-) 1191 WP_000193955.1 hypothetical protein -
  RK78_RS12185 (RK78_012185) - 2421809..2422300 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36031.29 Da        Isoelectric Point: 6.3646

>NTDB_id=223381 RK78_RS12160 WP_000219068.1 2417231..2418220(-) (ccpA) [Staphylococcus aureus strain FDAARGOS_20]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGKLIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNSLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=223381 RK78_RS12160 WP_000219068.1 2417231..2418220(-) (ccpA) [Staphylococcus aureus strain FDAARGOS_20]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAATCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAAGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAAAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTATTAGCAGGTTTAACTGAAGTGTTAAATAAAAATAGTCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAAAATGAAAGGTAACCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAGCCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCCAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

48.182

100

0.483
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

45.897

100

0.459

Multiple sequence alignment