Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | B4V05_RS06830 | Genome accession | NZ_CP020459 |
| Coordinates | 1328136..1329143 (-) | Length | 335 a.a. |
| NCBI ID | WP_076632061.1 | Uniprot ID | A0AAX0VC18 |
| Organism | Latilactobacillus sakei strain FAM18311 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1323136..1334143
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4V05_RS06790 (B4V05_06780) | - | 1323471..1323929 (-) | 459 | WP_011374992.1 | hypothetical protein | - |
| B4V05_RS06795 (B4V05_06785) | - | 1323984..1325180 (-) | 1197 | WP_011374993.1 | acetate/propionate family kinase | - |
| B4V05_RS06800 (B4V05_06790) | - | 1325202..1326212 (-) | 1011 | WP_011374994.1 | class I SAM-dependent methyltransferase | - |
| B4V05_RS06805 (B4V05_06795) | - | 1326336..1326569 (-) | 234 | WP_157779300.1 | hypothetical protein | - |
| B4V05_RS06810 (B4V05_06800) | comGF | 1326637..1327149 (-) | 513 | WP_041820873.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| B4V05_RS06815 (B4V05_06805) | comGE | 1327124..1327429 (-) | 306 | WP_025016385.1 | hypothetical protein | Machinery gene |
| B4V05_RS06820 (B4V05_06810) | comGD | 1327416..1327868 (-) | 453 | WP_089535121.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| B4V05_RS06825 (B4V05_06815) | comGC | 1327840..1328139 (-) | 300 | WP_089535122.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| B4V05_RS06830 (B4V05_06820) | comGB | 1328136..1329143 (-) | 1008 | WP_076632061.1 | type II secretion system F family protein | Machinery gene |
| B4V05_RS06835 (B4V05_06825) | comGA | 1329136..1330026 (-) | 891 | WP_076632060.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| B4V05_RS06840 (B4V05_06830) | - | 1330142..1330873 (-) | 732 | WP_076632059.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| B4V05_RS06845 (B4V05_06835) | - | 1330964..1331464 (-) | 501 | WP_076632058.1 | VanZ family protein | - |
| B4V05_RS06850 (B4V05_06840) | - | 1331561..1331950 (+) | 390 | WP_076632056.1 | hypothetical protein | - |
| B4V05_RS06860 (B4V05_06850) | - | 1332137..1333537 (-) | 1401 | WP_089535123.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38511.46 Da Isoelectric Point: 9.3969
>NTDB_id=223367 B4V05_RS06830 WP_076632061.1 1328136..1329143(-) (comGB) [Latilactobacillus sakei strain FAM18311]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGFIIICTY
LSILLPLYQTMEGIS
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGFIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=223367 B4V05_RS06830 WP_076632061.1 1328136..1329143(-) (comGB) [Latilactobacillus sakei strain FAM18311]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
TGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGTTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGACTCAAGTTAACGGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTAACCTTGGTAGCGCAA
TTAGAGGTTGTACTCGCTTCGGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTGGCTAAGCATAATCTTACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGTAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGTTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
TGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGTTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGACTCAAGTTAACGGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTAACCTTGGTAGCGCAA
TTAGAGGTTGTACTCGCTTCGGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTGGCTAAGCATAATCTTACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGTAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGTTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
98.806 |
100 |
0.988 |