Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   B4V05_RS06825 Genome accession   NZ_CP020459
Coordinates   1327840..1328139 (-) Length   99 a.a.
NCBI ID   WP_089535122.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1322840..1333139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS06790 (B4V05_06780) - 1323471..1323929 (-) 459 WP_011374992.1 hypothetical protein -
  B4V05_RS06795 (B4V05_06785) - 1323984..1325180 (-) 1197 WP_011374993.1 acetate/propionate family kinase -
  B4V05_RS06800 (B4V05_06790) - 1325202..1326212 (-) 1011 WP_011374994.1 class I SAM-dependent methyltransferase -
  B4V05_RS06805 (B4V05_06795) - 1326336..1326569 (-) 234 WP_157779300.1 hypothetical protein -
  B4V05_RS06810 (B4V05_06800) comGF 1326637..1327149 (-) 513 WP_041820873.1 competence type IV pilus minor pilin ComGF Machinery gene
  B4V05_RS06815 (B4V05_06805) comGE 1327124..1327429 (-) 306 WP_025016385.1 hypothetical protein Machinery gene
  B4V05_RS06820 (B4V05_06810) comGD 1327416..1327868 (-) 453 WP_089535121.1 competence type IV pilus minor pilin ComGD Machinery gene
  B4V05_RS06825 (B4V05_06815) comGC 1327840..1328139 (-) 300 WP_089535122.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  B4V05_RS06830 (B4V05_06820) comGB 1328136..1329143 (-) 1008 WP_076632061.1 type II secretion system F family protein Machinery gene
  B4V05_RS06835 (B4V05_06825) comGA 1329136..1330026 (-) 891 WP_076632060.1 competence type IV pilus ATPase ComGA Machinery gene
  B4V05_RS06840 (B4V05_06830) - 1330142..1330873 (-) 732 WP_076632059.1 YebC/PmpR family DNA-binding transcriptional regulator -
  B4V05_RS06845 (B4V05_06835) - 1330964..1331464 (-) 501 WP_076632058.1 VanZ family protein -
  B4V05_RS06850 (B4V05_06840) - 1331561..1331950 (+) 390 WP_076632056.1 hypothetical protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10907.88 Da        Isoelectric Point: 10.3019

>NTDB_id=223366 B4V05_RS06825 WP_089535122.1 1327840..1328139(-) (comGC) [Latilactobacillus sakei strain FAM18311]
MKKKRNAFTLIEMVVVLAIIALLILLVAPNLGAQKQRAEKKTDQALVTTLQTQVELASDEIGHQIKSLDELTDKYISKDQ
LKHAKEKGITIGGGTVKQK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=223366 B4V05_RS06825 WP_089535122.1 1327840..1328139(-) (comGC) [Latilactobacillus sakei strain FAM18311]
ATGAAGAAAAAAAGAAATGCTTTTACACTAATCGAAATGGTAGTTGTTCTTGCCATTATTGCGTTATTAATCTTATTAGT
TGCACCAAACCTAGGTGCTCAAAAACAGCGCGCGGAGAAGAAAACGGATCAAGCTTTGGTGACGACTTTGCAAACGCAAG
TTGAATTAGCTAGCGACGAGATTGGTCATCAAATTAAGAGTCTAGACGAATTAACGGATAAGTATATTTCAAAAGACCAA
TTAAAGCACGCAAAGGAGAAGGGGATTACAATTGGAGGCGGCACGGTTAAGCAAAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

97.98

100

0.98
  comGC/cglC Streptococcus pneumoniae TIGR4

42.268

97.98

0.414
  comGC/cglC Streptococcus pneumoniae Rx1

42.268

97.98

0.414
  comGC/cglC Streptococcus pneumoniae D39

42.268

97.98

0.414
  comGC/cglC Streptococcus pneumoniae R6

42.268

97.98

0.414
  comGC/cglC Streptococcus mitis SK321

40.206

97.98

0.394
  comGC/cglC Streptococcus mitis NCTC 12261

43.023

86.869

0.374

Multiple sequence alignment