Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   B4V05_RS06810 Genome accession   NZ_CP020459
Coordinates   1326637..1327149 (-) Length   170 a.a.
NCBI ID   WP_041820873.1    Uniprot ID   A0AAX0VCR7
Organism   Latilactobacillus sakei strain FAM18311     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1321637..1332149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS06780 (B4V05_06770) - 1321765..1322910 (+) 1146 WP_089535120.1 site-specific integrase -
  B4V05_RS06790 (B4V05_06780) - 1323471..1323929 (-) 459 WP_011374992.1 hypothetical protein -
  B4V05_RS06795 (B4V05_06785) - 1323984..1325180 (-) 1197 WP_011374993.1 acetate/propionate family kinase -
  B4V05_RS06800 (B4V05_06790) - 1325202..1326212 (-) 1011 WP_011374994.1 class I SAM-dependent methyltransferase -
  B4V05_RS06805 (B4V05_06795) - 1326336..1326569 (-) 234 WP_157779300.1 hypothetical protein -
  B4V05_RS06810 (B4V05_06800) comGF 1326637..1327149 (-) 513 WP_041820873.1 competence type IV pilus minor pilin ComGF Machinery gene
  B4V05_RS06815 (B4V05_06805) comGE 1327124..1327429 (-) 306 WP_025016385.1 hypothetical protein Machinery gene
  B4V05_RS06820 (B4V05_06810) comGD 1327416..1327868 (-) 453 WP_089535121.1 competence type IV pilus minor pilin ComGD Machinery gene
  B4V05_RS06825 (B4V05_06815) comGC 1327840..1328139 (-) 300 WP_089535122.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  B4V05_RS06830 (B4V05_06820) comGB 1328136..1329143 (-) 1008 WP_076632061.1 type II secretion system F family protein Machinery gene
  B4V05_RS06835 (B4V05_06825) comGA 1329136..1330026 (-) 891 WP_076632060.1 competence type IV pilus ATPase ComGA Machinery gene
  B4V05_RS06840 (B4V05_06830) - 1330142..1330873 (-) 732 WP_076632059.1 YebC/PmpR family DNA-binding transcriptional regulator -
  B4V05_RS06845 (B4V05_06835) - 1330964..1331464 (-) 501 WP_076632058.1 VanZ family protein -
  B4V05_RS06850 (B4V05_06840) - 1331561..1331950 (+) 390 WP_076632056.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19734.66 Da        Isoelectric Point: 6.9902

>NTDB_id=223363 B4V05_RS06810 WP_041820873.1 1326637..1327149(-) (comGF) [Latilactobacillus sakei strain FAM18311]
MRLIGRPIKHSAFTLIEMVISMAILILTSQLLVATVGVLQKAIKVTQQQQNTINWHISTIQLDQFLADAYFTHHQDQDGS
KITFRKPDTNQSGEEAETVYYLKRMKNEMVVVSQLDGYMPLLGKLKQLQLDYQRPFVQIDTTFTDQSRYQHEVFLEEQDE
QAKKKTIKTD

Nucleotide


Download         Length: 513 bp        

>NTDB_id=223363 B4V05_RS06810 WP_041820873.1 1326637..1327149(-) (comGF) [Latilactobacillus sakei strain FAM18311]
TTGCGATTAATTGGACGACCGATTAAGCATTCAGCGTTCACGCTAATTGAAATGGTGATTTCAATGGCGATTCTAATCCT
GACGAGTCAGTTACTGGTGGCAACGGTGGGTGTTTTACAAAAGGCAATTAAAGTGACACAACAACAGCAAAATACAATCA
ATTGGCATATCAGTACGATTCAGTTAGATCAGTTTTTAGCCGATGCGTATTTTACACATCATCAGGATCAAGATGGCTCC
AAAATCACTTTTCGAAAACCAGACACTAATCAGTCAGGGGAGGAAGCAGAGACTGTTTACTATTTAAAAAGGATGAAAAA
TGAAATGGTTGTTGTCAGTCAATTAGATGGGTATATGCCATTATTAGGCAAACTCAAGCAACTTCAACTTGACTATCAGC
GACCGTTTGTTCAAATCGATACGACTTTTACGGATCAGAGTCGCTACCAACACGAAGTTTTCTTGGAGGAACAAGATGAA
CAGGCTAAAAAAAAGACGATCAAAACCGATTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(40-149)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Latilactobacillus sakei subsp. sakei 23K

100

100

1

Multiple sequence alignment