Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6J88_RS24795 Genome accession   NZ_CP020452
Coordinates   2149120..2149812 (+) Length   230 a.a.
NCBI ID   WP_016686417.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2144120..2154812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS24775 (A6J88_10545) - 2144557..2144751 (-) 195 WP_039405018.1 hypothetical protein -
  A6J88_RS24780 (A6J88_10550) - 2144851..2146479 (+) 1629 WP_039405020.1 ABC-F family ATPase -
  A6J88_RS24785 (A6J88_10555) - 2146807..2147388 (-) 582 WP_003777725.1 superoxide dismutase -
  A6J88_RS24790 (A6J88_10560) dnaB 2147556..2148962 (+) 1407 WP_070491795.1 replicative DNA helicase -
  A6J88_RS24795 (A6J88_10565) pilH 2149120..2149812 (+) 693 WP_016686417.1 GspH/FimT family pseudopilin Machinery gene
  A6J88_RS24800 (A6J88_10570) pilV 2149825..2150502 (+) 678 WP_205836748.1 type IV pilus modification protein PilV -
  A6J88_RS24805 (A6J88_10575) - 2150502..2151479 (+) 978 WP_080614204.1 PilW family protein -
  A6J88_RS24810 (A6J88_10580) pilK 2151458..2152066 (+) 609 WP_080614205.1 pilus assembly PilX family protein Machinery gene
  A6J88_RS24815 (A6J88_10585) pilL 2152084..2152566 (+) 483 WP_080614206.1 PilX family type IV pilin Machinery gene
  A6J88_RS24820 (A6J88_10590) - 2152712..2153113 (-) 402 Protein_1990 transposase -
  A6J88_RS24825 (A6J88_10595) - 2153164..2154011 (+) 848 WP_099048475.1 IS630 family transposase -
  A6J88_RS24830 (A6J88_10600) - 2154014..2154623 (-) 610 Protein_1992 transposase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25065.40 Da        Isoelectric Point: 8.1096

>NTDB_id=223314 A6J88_RS24795 WP_016686417.1 2149120..2149812(+) (pilH) [Neisseria mucosa strain FDAARGOS_260]
MYAQQKGFTLIELLVVIAITAIMATIALPNMSEWIASRRAASQAEQVANLLRFARAEAVRLNLPVYVCPVKVRKHGLADG
TCDSSQKSSGLLAYADTNRDVAYKNDTSDISLRSIVLNGTDPAKVSHTFQHVAFGKDNADDGEAVFWSFMPNGTFGYTAS
KTLDKSTTFKYADGYIKISMTDSAATTEETKKSRASIVLIDSSGRVEICAKSDSRPLCQYSESQSPEPKK

Nucleotide


Download         Length: 693 bp        

>NTDB_id=223314 A6J88_RS24795 WP_016686417.1 2149120..2149812(+) (pilH) [Neisseria mucosa strain FDAARGOS_260]
ATGTACGCACAACAAAAAGGTTTTACCTTAATCGAATTGTTGGTCGTGATCGCTATTACCGCCATCATGGCCACTATCGC
CCTTCCCAATATGAGCGAATGGATTGCCTCACGCCGCGCTGCCAGTCAGGCAGAACAGGTGGCAAACCTCTTGCGCTTTG
CAAGAGCCGAAGCAGTTCGCCTCAATCTCCCTGTCTATGTCTGTCCCGTAAAAGTTAGAAAACACGGCTTGGCTGACGGC
ACATGCGATAGCAGCCAAAAAAGCAGCGGCTTGCTCGCCTATGCCGATACAAATCGGGACGTAGCCTATAAGAATGACAC
AAGTGATATTTCTTTGCGCTCCATAGTCCTCAACGGTACCGACCCTGCCAAAGTTTCCCATACATTCCAACACGTCGCAT
TTGGAAAAGATAATGCCGATGACGGTGAGGCCGTATTTTGGTCATTTATGCCCAACGGCACATTCGGCTATACCGCCTCT
AAAACACTGGATAAATCAACAACTTTCAAATACGCCGACGGCTACATCAAAATCAGCATGACCGATTCCGCCGCAACGAC
CGAAGAAACCAAAAAATCCCGCGCCAGTATCGTCCTTATCGACAGCAGCGGTCGCGTCGAAATCTGCGCCAAATCAGATT
CGCGACCCCTTTGCCAATATTCAGAATCTCAAAGTCCCGAACCCAAAAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-163)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

56.682

94.348

0.535

Multiple sequence alignment