Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   A6J88_RS24815 Genome accession   NZ_CP020452
Coordinates   2152084..2152566 (+) Length   160 a.a.
NCBI ID   WP_080614206.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147084..2157566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS24790 (A6J88_10560) dnaB 2147556..2148962 (+) 1407 WP_070491795.1 replicative DNA helicase -
  A6J88_RS24795 (A6J88_10565) pilH 2149120..2149812 (+) 693 WP_016686417.1 GspH/FimT family pseudopilin Machinery gene
  A6J88_RS24800 (A6J88_10570) pilV 2149825..2150502 (+) 678 WP_205836748.1 type IV pilus modification protein PilV -
  A6J88_RS24805 (A6J88_10575) - 2150502..2151479 (+) 978 WP_080614204.1 PilW family protein -
  A6J88_RS24810 (A6J88_10580) pilK 2151458..2152066 (+) 609 WP_080614205.1 pilus assembly PilX family protein Machinery gene
  A6J88_RS24815 (A6J88_10585) pilL 2152084..2152566 (+) 483 WP_080614206.1 PilX family type IV pilin Machinery gene
  A6J88_RS24820 (A6J88_10590) - 2152712..2153113 (-) 402 Protein_1990 transposase -
  A6J88_RS24825 (A6J88_10595) - 2153164..2154011 (+) 848 WP_099048475.1 IS630 family transposase -
  A6J88_RS24830 (A6J88_10600) - 2154014..2154623 (-) 610 Protein_1992 transposase -
  A6J88_RS29370 - 2154945..2155055 (+) 111 Protein_1993 IS5/IS1182 family transposase -
  A6J88_RS24835 (A6J88_10605) - 2155063..2155308 (+) 246 WP_276307988.1 PAAR domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17546.10 Da        Isoelectric Point: 9.1468

>NTDB_id=223316 A6J88_RS24815 WP_080614206.1 2152084..2152566(+) (pilL) [Neisseria mucosa strain FDAARGOS_260]
MNTSITKSQGFTLVEMLIVVAIIGILSTIAYPSYIHYIERGYQSQAHTELLAINNALKTKLVKNPTLKIKDEIEGDTGLV
KTYKAAPEVAAKYDFSGEMKNKDAKNSRAYYLFATPKTGTDYKLSVWMDSLGNAYKCTDAESAKAKLTSKNGNTGCEQVG

Nucleotide


Download         Length: 483 bp        

>NTDB_id=223316 A6J88_RS24815 WP_080614206.1 2152084..2152566(+) (pilL) [Neisseria mucosa strain FDAARGOS_260]
ATGAATACGTCTATCACTAAATCTCAAGGGTTTACGCTGGTTGAGATGCTGATTGTCGTTGCTATCATCGGCATCCTCAG
TACCATCGCTTACCCTTCCTATATCCATTACATCGAACGCGGCTACCAATCTCAGGCGCATACGGAACTGCTTGCTATTA
ACAATGCCTTGAAAACCAAATTAGTCAAAAATCCTACCCTCAAAATAAAAGATGAAATTGAGGGAGATACGGGATTGGTT
AAGACCTACAAAGCTGCGCCCGAGGTTGCTGCCAAATACGACTTCAGCGGTGAAATGAAAAATAAGGACGCTAAAAACAG
CAGGGCTTATTATCTTTTTGCCACTCCGAAAACCGGTACTGATTACAAACTTTCCGTTTGGATGGATAGTTTGGGTAATG
CCTACAAGTGTACCGATGCAGAATCGGCCAAAGCCAAGTTAACAAGTAAAAACGGTAATACAGGCTGTGAACAGGTAGGT
TGA

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(37-158)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

51.282

97.5

0.5
  pilX Neisseria meningitidis 8013

50.649

96.25

0.487

Multiple sequence alignment