Detailed information NTG0223288

Bioinformatically predicted

Overview

• Name: comP
• Type: Machinery gene
• Locus tag: A6J88_RS15780
• Genome accession: NZ_CP020452
• Coordinates: 372326..372790 (-)
• Length: 154 a.a.
• NCBI ID: WP_060975682.1
• Uniprot ID: -
• Organism: Neisseria mucosa strain FDAARGOS_260
• Function: DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	365446..372142	372326..372790	flank	184

Gene organization within MGE regions

Location: 365446..372790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J88_RS15740 (A6J88_01730)	-	365446..365772 (+)	327	Protein_331	transposase	-
A6J88_RS15745 (A6J88_01735)	-	365817..366824 (+)	1008	WP_080613443.1	IS5 family transposase	-
A6J88_RS15750 (A6J88_01745)	-	367026..367832 (-)	807	WP_080613444.1	integrase core domain-containing protein	-
A6J88_RS15755 (A6J88_01750)	-	367874..368530 (+)	657	Protein_334	IS30 family transposase	-
A6J88_RS15760 (A6J88_01755)	-	368702..370015 (+)	1314	WP_060974820.1	NCS2 family permease	-
A6J88_RS15770 (A6J88_01760)	-	370183..371093 (+)	911	WP_240593995.1	IS630 family transposase	-
A6J88_RS15775 (A6J88_01765)	-	371135..372142 (-)	1008	WP_080613445.1	IS5 family transposase	-
A6J88_RS15780 (A6J88_01770)	comP	372326..372790 (-)	465	WP_060975682.1	type IV pilin protein	Machinery gene

Sequence

Protein

• Length: 154 a.a.
• Molecular weight: 17279.74 Da
• Isoelectric Point: 8.5908

>NTDB_id=223288 A6J88_RS15780 WP_060975682.1 372326..372790(-) (comP) [Neisseria mucosa strain FDAARGOS_260]
MNKENCKGYSLTQLIFVIAIIGILTSIAYPSYQKYIRDSEIRQALAALVESAQFMERFYQQNGSFKKTSTAWPDLPNSRS
LENFCIYPNGLARGALDGKFTLKAVALDKNKEPRVIKINESLTTFICESSASSCDDVTKNYFSGADKNCSVYRL

Nucleotide

• Length: 465 bp

>NTDB_id=223288 A6J88_RS15780 WP_060975682.1 372326..372790(-) (comP) [Neisseria mucosa strain FDAARGOS_260]
ATGAATAAAGAAAATTGTAAAGGGTATTCTCTTACTCAATTAATCTTTGTAATTGCAATAATTGGGATTTTAACTTCAAT
AGCTTATCCAAGTTATCAAAAATATATTAGAGACTCTGAAATACGTCAGGCTCTGGCAGCGCTTGTTGAGAGTGCTCAGT
TTATGGAACGATTTTATCAGCAGAATGGTAGTTTCAAGAAAACTTCTACAGCGTGGCCTGATTTGCCTAACTCTCGGAGT
TTAGAAAACTTTTGTATTTATCCTAATGGGCTTGCTAGAGGCGCGTTAGATGGGAAATTTACTTTAAAAGCAGTTGCATT
AGATAAGAATAAAGAACCTAGGGTAATAAAGATTAATGAATCTCTAACGACTTTTATTTGTGAGAGTAGTGCTAGTTCTT
GTGATGATGTTACGAAAAACTATTTTTCTGGTGCAGATAAAAACTGTTCCGTATATCGGCTTTAA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (30-107)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comP	Neisseria meningitidis 8013	54.422	95.455	0.519
comP	Neisseria gonorrhoeae MS11	54.422	95.455	0.519
comP	Neisseria subflava NJ9703	47.297	96.104	0.455