Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   A6J87_RS07305 Genome accession   NZ_CP020451
Coordinates   1414465..1415499 (+) Length   344 a.a.
NCBI ID   WP_404968626.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1409465..1420499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS11075 - 1409958..1410083 (+) 126 WP_263969678.1 hypothetical protein -
  A6J87_RS07275 (A6J87_07245) - 1410102..1410737 (+) 636 WP_080610810.1 DUF4230 domain-containing protein -
  A6J87_RS07280 (A6J87_07250) - 1410756..1411484 (+) 729 WP_080610809.1 hypothetical protein -
  A6J87_RS07285 (A6J87_07255) - 1411662..1412911 (+) 1250 Protein_1374 ISL3 family transposase -
  A6J87_RS07290 (A6J87_07260) - 1412954..1413253 (-) 300 WP_080610807.1 hypothetical protein -
  A6J87_RS07295 (A6J87_07265) - 1413250..1413669 (-) 420 WP_004183267.1 HIT family protein -
  A6J87_RS07300 (A6J87_07270) pptA 1413734..1414465 (+) 732 WP_080610806.1 ABC transporter ATP-binding protein Regulator
  A6J87_RS07305 (A6J87_07275) pptB 1414465..1415499 (+) 1035 WP_404968626.1 ABC transporter permease Regulator
  A6J87_RS07310 (A6J87_07280) ccrZ 1415557..1416348 (+) 792 WP_002884270.1 cell cycle regulator CcrZ -
  A6J87_RS07315 (A6J87_07285) trmB 1416358..1416999 (+) 642 WP_080611837.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  A6J87_RS07325 (A6J87_07295) - 1417254..1418435 (-) 1182 WP_080611838.1 NAD(P)/FAD-dependent oxidoreductase -
  A6J87_RS07330 (A6J87_07300) ilvD 1418548..1420266 (+) 1719 WP_192573908.1 dihydroxy-acid dehydratase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39810.25 Da        Isoelectric Point: 10.5822

>NTDB_id=223267 A6J87_RS07305 WP_404968626.1 1414465..1415499(+) (pptB) [Streptococcus salivarius strain FDAARGOS_259]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALGLPVWGVILVAVAMAILKYVIFQKKAQPFYKQSG
LNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKENTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLITQIVLVLTLVQAICLFDLKFS
LILVGIMLVLSLAYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=223267 A6J87_RS07305 WP_404968626.1 1414465..1415499(+) (pptB) [Streptococcus salivarius strain FDAARGOS_259]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTTAATGCCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGATCA
TTTTATCTTGGTTCTTCTCTTTCTGCTAGGCTTTGTCTTGGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAAATC
CGTGGGCAATCATTCTTGGCTTGCTTGTGCTTTGTCTGTTATTACCTTTCTGGGGGAATATTGCGACTTATCTAGAACCT
GCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTGCTAGACCATGTTAAGAAGGCAACAGGGCGTGCTTTTAGATT
TTGGGTAATAGTACAAACCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTATGTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGA
CTGAATTGGACTGAGGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATCTTGAAGTTCTTTTCACTCTTTACCAATGT
TAAAGGGATTACGTCGAGTGTTAAACGTCGTGCCTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAAAATA
CCTGGTATAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCCCTAACG
CTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTTCCA
GCTCACAGCACTAAAATCACACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTACTCAGATTGTACTTGTGCTGACTCTGGTCCAGGCTATTTGCCTCTTCGATCTTAAGTTTAGC
CTGATTTTGGTTGGAATTATGCTGGTTTTGAGCCTTGCTTACCTACCGGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

98.547

100

0.985

  pptB Streptococcus thermophilus LMD-9

92.442

100

0.924


Multiple sequence alignment