Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   A6J85_RS10950 Genome accession   NZ_CP020450
Coordinates   2198609..2199613 (-) Length   334 a.a.
NCBI ID   WP_082307767.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2193609..2204613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS11195 (A6J85_10805) - 2195046..2195417 (-) 372 WP_045773786.1 hypothetical protein -
  A6J85_RS10940 (A6J85_10815) - 2196152..2197465 (-) 1314 WP_048778536.1 glycosyltransferase family 4 protein -
  A6J85_RS10945 (A6J85_10820) - 2197467..2198465 (-) 999 WP_041789613.1 glycosyltransferase family 4 protein -
  A6J85_RS10950 (A6J85_10825) ccpA 2198609..2199613 (-) 1005 WP_082307767.1 catabolite control protein A Regulator
  A6J85_RS10955 (A6J85_10830) - 2199778..2200860 (+) 1083 WP_048778530.1 Xaa-Pro peptidase family protein -
  A6J85_RS11200 (A6J85_11100) - 2200911..2201018 (-) 108 Protein_2082 DNA-entry nuclease -
  A6J85_RS10965 (A6J85_11105) - 2201311..2202357 (+) 1047 WP_105165156.1 iron ABC transporter permease -
  A6J85_RS10970 (A6J85_11110) - 2202359..2203114 (+) 756 WP_105165157.1 ABC transporter ATP-binding protein -
  A6J85_RS10975 (A6J85_10840) - 2203259..2204287 (+) 1029 WP_061601745.1 ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 37076.17 Da        Isoelectric Point: 6.5152

>NTDB_id=223212 A6J85_RS10950 WP_082307767.1 2198609..2199613(-) (ccpA) [Streptococcus gordonii strain FDAARGOS_257]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPSITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTIDVEHQLPS
VNIDYKQATIDAITFLAKRNKKIAFVCGPLVDDINGKVRLSGYKTALKSKKLSYSEGLVFESKYGYDDGYNLAERVIASK
ATAAFVTGDELAAGLLNGLADRGVKIPEDFEIITSDDSQISRYTRPNLSTISQPLYDLGAISMRMLTKIMHKEELEEREV
VLSHGIYERDSTRK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=223212 A6J85_RS10950 WP_082307767.1 2198609..2199613(-) (ccpA) [Streptococcus gordonii strain FDAARGOS_257]
ATGAACACAGACGATACAGTAACCATTTATGATGTCGCCCGTGAAGCAGGGGTTTCTATGGCGACAGTTAGTCGTGTAGT
TAATGGAAACAAGAATGTAAAAGAAAACACTCGGAAAAAAGTTTTGGAAGTAATTGATCGCCTTGATTATCGTCCAAATG
CAGTGGCTCGTGGTTTGGCTAGCAAGAAGACTACGACAGTTGGTGTTGTGATTCCAAGTATTACAAATAGTTATTTCTCA
ACACTCGCCAAGGGAATTGATGATATTGCTGAGATGTATAAATACAATATCGTCCTAGCAAACAGCGATGAGGATGATGA
TAAGGAAGTTTCAGTTGTAAACACTCTCTTTTCGAAACAAGTAGATGGTATTATCTTTATGGGTTACCACCTTACTGAAA
AGATTCGTTCAGAATTTTCACGCTCACGCACGCCAGTTGTCTTGGCTGGAACTATTGATGTGGAGCACCAATTGCCAAGT
GTTAATATAGATTATAAACAGGCTACAATTGATGCTATCACATTCCTTGCTAAGCGCAATAAAAAAATTGCTTTTGTGTG
CGGACCTTTAGTTGATGATATCAATGGAAAAGTACGCTTATCCGGTTATAAAACGGCTCTTAAGAGCAAAAAGCTGTCAT
ACAGCGAAGGTCTTGTTTTTGAGTCTAAGTATGGCTATGATGATGGCTATAATTTAGCTGAACGAGTAATTGCTTCTAAA
GCAACGGCTGCTTTTGTTACAGGTGATGAGCTGGCAGCTGGTCTTTTAAACGGACTAGCTGATCGCGGAGTAAAAATTCC
AGAGGATTTTGAAATTATTACTAGCGATGATTCACAAATATCTCGCTATACACGTCCAAATTTGTCGACTATCAGCCAGC
CTTTATATGATTTAGGTGCTATTAGTATGCGTATGCTGACTAAAATTATGCACAAGGAAGAGTTGGAAGAACGCGAAGTT
GTTTTATCTCATGGTATTTACGAACGGGACTCAACTAGAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

99.401

100

0.994

  ccpA Streptococcus pneumoniae D39

86.826

100

0.868

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

56.798

99.102

0.563


Multiple sequence alignment