Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   A6J82_RS11455 Genome accession   NZ_CP020449
Coordinates   2208386..2209675 (-) Length   429 a.a.
NCBI ID   WP_000432958.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_254     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2203386..2214675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J82_RS11445 (A6J82_11425) hpf 2207090..2207644 (-) 555 WP_000599095.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  A6J82_RS11450 (A6J82_11430) - 2207721..2208386 (-) 666 WP_000128299.1 ComF family protein -
  A6J82_RS11455 (A6J82_11435) comFA/cflA 2208386..2209675 (-) 1290 WP_000432958.1 DEAD/DEAH box helicase Machinery gene
  A6J82_RS11460 (A6J82_11440) - 2209731..2210375 (+) 645 WP_001108147.1 YigZ family protein -
  A6J82_RS11465 (A6J82_11445) cysK 2210466..2211392 (+) 927 WP_000036948.1 cysteine synthase A -
  A6J82_RS11470 (A6J82_11450) - 2211544..2212632 (-) 1089 WP_000862118.1 glycerol dehydrogenase -
  A6J82_RS11475 (A6J82_11455) - 2212700..2213368 (-) 669 WP_000394891.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 48772.62 Da        Isoelectric Point: 9.9154

>NTDB_id=223142 A6J82_RS11455 WP_000432958.1 2208386..2209675(-) (comFA/cflA) [Streptococcus agalactiae strain FDAARGOS_254]
MENYLGRLWTKAQLSEQLRKIAISLPSFIKKGSDYICTRCSSSVAKNCQLPTGNYYCRECIVFGRVTSNENLYYFPQKTF
SKTNSLKWKGELTPYQNEVSEELLKGISSKENLLVHAVIGAGKTEMIYHSVAKVIDTGGSVCIASPRIDVCLELYKRLSN
DFRCAITLMHGESPSYQRSPLTIATTHQLLKFYHAFDLLIVDEVDAFPYVDNPILYQGVKQALKENGTSIFLTATSTTEL
ERKVARKELKKLHLARRFHANPLVIPEMVWVSGIQKSLQTQKLPPKLYQLINKQRQTRYPLLLFFPHISEGQVFTEILRQ
AFPMEKIGFVSSKSTSRLKLVQDFRDNKLSILVSTTILERGVTFPSVDVFVIQANHHLFTKSSLVQISGRVGRALERPEG
LLYFLHDGKSKSMHQAIKEIKNMNHIGGF

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=223142 A6J82_RS11455 WP_000432958.1 2208386..2209675(-) (comFA/cflA) [Streptococcus agalactiae strain FDAARGOS_254]
ATGGAAAATTATTTAGGTAGGCTTTGGACAAAAGCACAATTATCTGAGCAACTTAGAAAAATTGCAATTAGCTTGCCATC
TTTTATAAAGAAAGGAAGCGACTATATTTGTACCCGATGCTCTAGTTCTGTTGCTAAAAATTGCCAATTACCAACTGGAA
ATTATTATTGTAGAGAATGTATAGTTTTTGGAAGAGTTACTAGTAATGAAAATTTATATTATTTCCCACAAAAAACATTT
TCTAAAACGAATTCTTTAAAATGGAAAGGGGAACTGACACCTTATCAAAATGAGGTTTCAGAAGAGTTGTTGAAAGGTAT
TTCAAGTAAGGAAAATCTTCTTGTTCATGCTGTGATAGGGGCTGGTAAAACAGAAATGATATACCACTCTGTCGCCAAAG
TAATTGATACTGGAGGAAGCGTTTGTATTGCCAGTCCTAGAATTGATGTTTGTTTAGAATTGTATAAGCGACTTTCAAAC
GATTTTAGATGTGCCATAACATTAATGCATGGAGAATCTCCTTCTTATCAGAGATCCCCTTTAACTATTGCCACAACACA
TCAATTGTTAAAATTTTATCATGCTTTTGATTTGCTAATTGTTGATGAAGTTGATGCTTTTCCGTATGTCGACAACCCGA
TACTATACCAGGGTGTAAAACAGGCCTTAAAGGAAAACGGAACAAGTATTTTTCTGACTGCAACTTCAACGACTGAGTTA
GAAAGAAAAGTTGCAAGAAAAGAACTAAAAAAATTGCATCTAGCTAGGAGATTTCATGCCAATCCGTTAGTGATACCCGA
GATGGTTTGGGTAAGTGGTATCCAGAAAAGCTTGCAGACACAAAAACTACCTCCCAAATTATATCAGTTGATAAATAAAC
AGCGACAAACGAGATATCCTTTGTTATTATTTTTCCCCCATATTTCAGAAGGTCAGGTATTCACCGAAATTTTAAGACAA
GCCTTTCCTATGGAAAAAATTGGTTTTGTTTCAAGTAAGAGCACATCTAGGTTAAAGTTAGTGCAAGATTTTCGAGATAA
CAAATTGTCTATCCTAGTGTCAACTACCATTCTAGAGAGAGGAGTAACTTTCCCTAGCGTCGACGTTTTTGTTATACAAG
CAAATCATCATTTGTTTACGAAAAGTTCCTTGGTACAAATTTCAGGAAGAGTTGGAAGAGCATTAGAAAGGCCCGAAGGG
CTCCTTTACTTCCTTCATGATGGGAAAAGTAAATCGATGCACCAAGCTATAAAGGAGATTAAAAACATGAATCATATAGG
AGGATTTTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(93-240)

Helicase conserved C-terminal domain (Helicase_C)

(286-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis NCTC 12261

60.656

99.534

0.604
  comFA/cflA Streptococcus pneumoniae Rx1

60.187

99.534

0.599
  comFA/cflA Streptococcus pneumoniae D39

60.187

99.534

0.599
  comFA/cflA Streptococcus pneumoniae R6

60.187

99.534

0.599
  comFA/cflA Streptococcus mitis SK321

60.187

99.534

0.599
  comFA/cflA Streptococcus pneumoniae TIGR4

60.187

99.534

0.599
  comFA Lactococcus lactis subsp. cremoris KW2

49.492

91.841

0.455
  comFA Bacillus subtilis subsp. subtilis str. 168

39.312

94.872

0.373
  comFA Latilactobacillus sakei subsp. sakei 23K

36.322

100

0.368

Multiple sequence alignment