Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   A6J31_RS08445 Genome accession   NZ_CP020431
Coordinates   1651424..1653394 (-) Length   656 a.a.
NCBI ID   WP_080610955.1    Uniprot ID   -
Organism   Streptococcus sp. FDAARGOS_192     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1646424..1658394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J31_RS08430 (A6J31_08365) - 1647024..1647914 (-) 891 WP_038676823.1 hypothetical protein -
  A6J31_RS08435 (A6J31_08370) - 1647973..1649280 (-) 1308 WP_064523444.1 GHKL domain-containing protein -
  A6J31_RS08440 (A6J31_08375) gltX 1649734..1651188 (-) 1455 WP_037611119.1 glutamate--tRNA ligase -
  A6J31_RS08445 (A6J31_08380) amiA 1651424..1653394 (-) 1971 WP_080610955.1 peptide ABC transporter substrate-binding protein Regulator
  A6J31_RS08450 (A6J31_08385) - 1653689..1654938 (+) 1250 Protein_1438 ISL3 family transposase -
  A6J31_RS08455 (A6J31_08390) rplA 1654993..1655682 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  A6J31_RS08460 (A6J31_08395) rplK 1655782..1656207 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  A6J31_RS08465 (A6J31_08400) - 1656379..1656732 (+) 354 WP_070655743.1 DUF3397 domain-containing protein -
  A6J31_RS08470 (A6J31_08405) - 1656827..1657324 (-) 498 WP_048790870.1 beta-class carbonic anhydrase -
  A6J31_RS08475 (A6J31_08410) - 1657476..1658171 (-) 696 WP_048790869.1 TIGR00266 family protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72801.58 Da        Isoelectric Point: 4.9572

>NTDB_id=222889 A6J31_RS08445 WP_080610955.1 1651424..1653394(-) (amiA) [Streptococcus sp. FDAARGOS_192]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGSDPATLDYLATNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
EDWSVSQDGLTYTYKIRKGLKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGDFLKSKGKDFGKSTDPTSILYNGPYLLKALTTKSSIEFTKNENYWDKD
HVYFDNIKLTYDDGSDQESLERNFTDGVYNLARLFPTSSNYSKVEKQYKDNIFYTQPGSAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQSLGFAIDRTNYAAQLNGKEGGSTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSSKITVNQVQSIKQSVESALGKDNVVLDIHQLSADDFNN
ITYSAPNAAAEDWDLSVGVAWDPDYLDPSTYLDVLKTTSSENTKSFMGYDDPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVVSRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=222889 A6J31_RS08445 WP_080610955.1 1651424..1653394(-) (amiA) [Streptococcus sp. FDAARGOS_192]
ATGAAAAAGAGTAAGGTATTTTTACTAGCAGCCGTAGGCCTATTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTATGGTAGTGACCCTGCAACCTTGGACTATCTTGCTACAAACAAGAAAA
ATATGACTACAGCTGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATTTAAAACCTTCTGTCGCT
GAAGACTGGTCTGTTTCTCAAGATGGTTTGACCTATACTTACAAGATTCGTAAGGGACTTAAATGGTACACTTCAGATGG
CGAAGAATATGCCAATGTAACAGCTAAGGACTTTGTAACAGGTCTTAAGCATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACACTTAGTCAACCAGAACCTTACTGGAATTCAAAATTGACTTACTCTGTTAC
TTGGCCTGTTAATGGAGACTTCTTGAAATCTAAAGGTAAAGATTTTGGTAAGTCAACAGACCCAACATCTATTCTTTATA
ACGGTCCATACCTTCTTAAGGCTTTGACAACGAAGTCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
CACGTCTATTTTGATAATATCAAATTGACTTATGATGATGGATCAGACCAAGAGTCTTTGGAACGCAACTTTACAGATGG
TGTATACAACTTAGCACGTCTATTCCCAACAAGTTCTAACTATTCCAAAGTTGAAAAACAGTACAAAGATAATATTTTCT
ATACGCAACCTGGATCAGCTGTAGAAGGTGTTGGTATTAATATTGACCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTCAATAAGGATTTCCGTCAATCATTAGGTTTTGCCATTGACCGTAC
AAATTACGCCGCACAACTTAATGGTAAGGAAGGTGGAAGTACTGCCGTCCGTAATATCTTTGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAACCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGAGTTCAGTTCCCAATTCATTTGGATGTCCCTGTTAATCAATCAAGTAAAATTACTGTGAATCAGGTACAATCAATTA
AACAGTCTGTTGAATCTGCTCTTGGAAAAGACAATGTTGTGCTTGATATCCACCAATTGTCAGCTGATGATTTTAACAAC
ATCACTTACTCTGCACCAAATGCAGCTGCAGAAGATTGGGACTTGTCAGTGGGTGTGGCTTGGGACCCTGATTACCTTGA
TCCTTCAACTTATCTTGATGTCTTGAAAACGACAAGTAGCGAAAATACTAAATCCTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCCGCTGTAGTTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAGAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.817

100

0.698
  amiA3 Streptococcus thermophilus LMD-9

68.645

100

0.687
  amiA3 Streptococcus thermophilus LMG 18311

67.884

100

0.68

Multiple sequence alignment