Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   A6J50_RS13460 Genome accession   NZ_CP020422
Coordinates   2280983..2281456 (-) Length   157 a.a.
NCBI ID   WP_002230430.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_211     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275983..2286456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J50_RS13420 (A6J50_13060) dut 2276668..2277120 (-) 453 WP_002232309.1 dUTP diphosphatase -
  A6J50_RS13425 (A6J50_13065) - 2277263..2277691 (+) 429 Protein_2205 AzlC family ABC transporter permease -
  A6J50_RS13460 (A6J50_13100) pilX 2280983..2281456 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  A6J50_RS13465 (A6J50_13105) pilK 2281461..2282054 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J50_RS13470 (A6J50_13110) pilJ 2282033..2282986 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  A6J50_RS13475 (A6J50_13115) pilV 2282983..2283603 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  A6J50_RS13480 (A6J50_13120) pilH 2283633..2284301 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J50_RS13490 (A6J50_13125) dnaB 2284603..2286009 (-) 1407 WP_002219448.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17472.18 Da        Isoelectric Point: 9.1946

>NTDB_id=222735 A6J50_RS13460 WP_002230430.1 2280983..2281456(-) (pilX) [Neisseria meningitidis strain FDAARGOS_211]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=222735 A6J50_RS13460 WP_002230430.1 2280983..2281456(-) (pilX) [Neisseria meningitidis strain FDAARGOS_211]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

98.089

100

0.981
  pilL Neisseria gonorrhoeae MS11

87.261

100

0.873

Multiple sequence alignment