Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6J50_RS13465 Genome accession   NZ_CP020422
Coordinates   2281461..2282054 (-) Length   197 a.a.
NCBI ID   WP_002229321.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_211     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2276461..2287054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J50_RS13420 (A6J50_13060) dut 2276668..2277120 (-) 453 WP_002232309.1 dUTP diphosphatase -
  A6J50_RS13425 (A6J50_13065) - 2277263..2277691 (+) 429 Protein_2205 AzlC family ABC transporter permease -
  A6J50_RS13460 (A6J50_13100) pilX 2280983..2281456 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  A6J50_RS13465 (A6J50_13105) pilK 2281461..2282054 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J50_RS13470 (A6J50_13110) pilJ 2282033..2282986 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  A6J50_RS13475 (A6J50_13115) pilV 2282983..2283603 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  A6J50_RS13480 (A6J50_13120) pilH 2283633..2284301 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J50_RS13490 (A6J50_13125) dnaB 2284603..2286009 (-) 1407 WP_002219448.1 replicative DNA helicase -
  A6J50_RS13500 (A6J50_13135) - 2286172..2286759 (+) 588 WP_002246908.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21655.53 Da        Isoelectric Point: 7.5809

>NTDB_id=222736 A6J50_RS13465 WP_002229321.1 2281461..2282054(-) (pilK) [Neisseria meningitidis strain FDAARGOS_211]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCPANSTNLCIDNKGTKYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=222736 A6J50_RS13465 WP_002229321.1 2281461..2282054(-) (pilK) [Neisseria meningitidis strain FDAARGOS_211]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGAAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment