Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C2H95_RS11175 Genome accession   NZ_CP026037
Coordinates   2148167..2148616 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PK5_17     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2143167..2153616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS11135 (C2H95_11100) ctaE 2143185..2143808 (+) 624 WP_038828405.1 cytochrome c oxidase subunit III -
  C2H95_RS11140 (C2H95_11105) ctaF 2143811..2144143 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C2H95_RS11145 (C2H95_11110) ctaG 2144170..2145063 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  C2H95_RS11150 (C2H95_11115) ylbA 2145095..2145457 (-) 363 WP_072175372.1 YugN family protein -
  C2H95_RS11155 (C2H95_11120) ylbB 2145597..2146043 (+) 447 WP_003221362.1 CBS domain-containing protein -
  C2H95_RS11160 (C2H95_11125) ylbC 2146127..2147167 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  C2H95_RS11165 (C2H95_11130) ylbD 2147398..2147796 (+) 399 WP_003232233.1 YlbD family protein -
  C2H95_RS11170 (C2H95_11135) ylbE 2147812..2148051 (+) 240 WP_003232231.1 YlbE-like family protein -
  C2H95_RS11175 (C2H95_11140) ylbF 2148167..2148616 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C2H95_RS11180 (C2H95_11145) ylbG 2148671..2148943 (+) 273 WP_009967171.1 YlbG family protein -
  C2H95_RS11185 (C2H95_11150) rsmD 2149266..2149820 (+) 555 WP_124073195.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2H95_RS11190 (C2H95_11155) coaD 2149825..2150310 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C2H95_RS11195 (C2H95_11160) spoVV 2150321..2151547 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  C2H95_RS11200 (C2H95_11165) ylbK 2151728..2152510 (+) 783 WP_064671351.1 patatin family protein -
  C2H95_RS11205 (C2H95_11170) sepM 2152512..2153537 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=222669 C2H95_RS11175 WP_003221370.1 2148167..2148616(+) (ylbF) [Bacillus subtilis strain PK5_17]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=222669 C2H95_RS11175 WP_003221370.1 2148167..2148616(+) (ylbF) [Bacillus subtilis strain PK5_17]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment