Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   A6J49_RS08115 Genome accession   NZ_CP020421
Coordinates   1382877..1383350 (-) Length   157 a.a.
NCBI ID   WP_002225356.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_210     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377877..1388350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J49_RS15145 - 1378609..1378734 (-) 126 Protein_1329 IS5/IS1182 family transposase -
  A6J49_RS08090 (A6J49_07785) dapC 1378823..1380010 (-) 1188 WP_002225352.1 succinyldiaminopimelate transaminase -
  A6J49_RS08095 (A6J49_07790) dut 1380088..1380540 (-) 453 WP_002225353.1 dUTP diphosphatase -
  A6J49_RS08100 (A6J49_07795) - 1380740..1381108 (+) 369 Protein_1332 AzlC family ABC transporter permease -
  A6J49_RS08115 (A6J49_07805) pilX 1382877..1383350 (-) 474 WP_002225356.1 PilX family type IV pilin Machinery gene
  A6J49_RS08120 (A6J49_07810) pilK 1383355..1383954 (-) 600 WP_105165303.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J49_RS08125 (A6J49_07815) - 1383933..1384875 (-) 943 Protein_1335 PilW family protein -
  A6J49_RS08130 (A6J49_07820) pilV 1384872..1385480 (-) 609 WP_061706010.1 type IV pilus modification protein PilV Machinery gene
  A6J49_RS08135 (A6J49_07825) pilH 1385504..1386172 (-) 669 WP_002230433.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J49_RS08145 (A6J49_07830) dnaB 1386474..1387880 (-) 1407 WP_002225362.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17521.30 Da        Isoelectric Point: 9.4258

>NTDB_id=222667 A6J49_RS08115 WP_002225356.1 1382877..1383350(-) (pilX) [Neisseria meningitidis strain FDAARGOS_210]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIENKLEIFVSGYKM
NPKIAKKYSVSVKFVDKEKSRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=222667 A6J49_RS08115 WP_002225356.1 1382877..1383350(-) (pilX) [Neisseria meningitidis strain FDAARGOS_210]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCGAGAACAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATAAGGAAAAATCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

92.994

100

0.93
  pilL Neisseria gonorrhoeae MS11

88.535

100

0.885

Multiple sequence alignment