Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   A6J48_RS10630 Genome accession   NZ_CP020420
Coordinates   1795607..1798825 (+) Length   1072 a.a.
NCBI ID   WP_105182967.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1790607..1803825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J48_RS10605 (A6J48_10420) ccoO 1791753..1792364 (+) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -
  A6J48_RS10610 (A6J48_10425) - 1792369..1792539 (+) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  A6J48_RS14475 (A6J48_10430) ccoP 1792563..1793894 (+) 1332 Protein_1778 cytochrome-c oxidase, cbb3-type subunit III -
  A6J48_RS10625 (A6J48_10440) - 1794096..1795505 (+) 1410 WP_002247044.1 PepSY domain-containing protein -
  A6J48_RS10630 (A6J48_10445) recC 1795607..1798825 (+) 3219 WP_105182967.1 exodeoxyribonuclease V subunit gamma Machinery gene
  A6J48_RS10635 (A6J48_10450) mtrF 1798893..1800461 (-) 1569 WP_082308688.1 AbgT family antimetabolite efflux transporter MtrF -
  A6J48_RS10640 (A6J48_10455) - 1800793..1801005 (+) 213 WP_002236739.1 hypothetical protein -
  A6J48_RS10645 (A6J48_10460) mtrR 1801284..1801916 (-) 633 WP_002216625.1 multidrug efflux system transcriptional repressor MtrR -
  A6J48_RS10655 (A6J48_10465) mtrC 1802320..1803558 (+) 1239 WP_002237304.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -

Sequence

Protein


Download         Length: 1072 a.a.        Molecular weight: 120793.54 Da        Isoelectric Point: 4.8694

>NTDB_id=222639 A6J48_RS10630 WP_105182967.1 1795607..1798825(+) (recC) [Neisseria meningitidis strain FDAARGOS_209]
MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALESLSKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP
SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPS
ENVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVS
DVKISRRQPLFHALSCLFDLLESRFEVDKVLALLEIAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTW
KQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLETLFQAEAD
DQKSVQNLENEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDF
PRNTKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQ
LAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWL
QQQLAWSEPHIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAESLLPSGELGRLWQQNFQTAAKQIDTAV
LNSPKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGETEILA
EIAQDRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYYGNKVSKGQKDYTEVALVFGNAS
QNPLEQPLFENLARLLADTLAAAEKREGAGAA

Nucleotide


Download         Length: 3219 bp        

>NTDB_id=222639 A6J48_RS10630 WP_105182967.1 1795607..1798825(+) (recC) [Neisseria meningitidis strain FDAARGOS_209]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCATTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTATCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGTGAAGCATTCCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCAGATTACCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGCGGCTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGATGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAGCTGCTTGCCGCGTTGGAATCTTTGAGCAAGGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTT
CCACGATGGCGCCGATGTATCTTCAGCTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTCGCACTCAATCCG
AGCGGGATGTATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGG
GCATCCGCTGCTCGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGCGAAA
CGCCGGTATTTGAAGAAGGCGGACGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCT
GAAAATGTGGGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCCTTGCGCGAATTGCAGAT
ACTCAAAGACAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAACA
TCGAATCCTATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGCGCGCAGGCATTGCCGTATTCCGTTTCG
GACGTGAAAATCAGCCGCCGACAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGCTGGAAAGCCGATTTGAAGT
CGACAAAGTGCTCGCGCTTTTGGAAATCGCGCCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGC
ACGACATGGTTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTCACCTGG
AAGCAGGCGGTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAACCCGATGTGGCAGGATGTCAGCGCGTG
GTATGCCGACGTGAACCAAACCGCCCTGTTCGGACGTTTTGCCGCCCTCCTCGAAACCCTGTCGGATATTGTACGGATAT
GGCGGCAGCCCGCAACGATCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTCCAAGCTGAAGCCGAT
GACCAAAAGTCAGTCCAAAACCTTGAAAACGAATGGGTCAAATGGCAGGCGGAAACAGAATTGGCGCAATTTTCCGGACA
GTTGCCGCAACAAACCGTCATCCGCCATATCCGACGTTTCCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCA
TCACCTTTTGCAGTATGGTGCCGATGCGGAGCCTGCCGTTCAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTT
CCCCGCAATACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGATGACGA
CCGCTACCTCTTCCTCGAAGCCCTCATCAGCGCGCGCGAAATCCTGTACCTGTCCTACATCGGGCGCGACATCCGCAAAG
ACGAAGAGCTTGCTCCGTCTTCGCTGTTGGGTGAACTCATCGATACCGTTGCCGCTATGGCGGGCATCGGTAGCCGCCAA
CTTGCACAAAACCTGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGG
CATATTCGGCACGCGTACCGACTACGCCACTGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGACCAACCCG
TAGAAAACGCCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGTTTCTGGCGCAACCCCGTCAAAGTATGGCTT
CAGCAGCAGCTTGCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGA
TCAAATCGCCGAAACCTACATCGAAGCACGGCGCGAAGGACGGGATTTTGCCCAAACCGCCGCCCGCATCGGGGCGGAAA
GCCTCCTGCCGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGAACTTCCAAACTGCTGCCAAACAAATCGACACGGCGGTT
TTAAACAGCCCCAAACTGCCACCGCTTTCATATGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCT
GTACCGCTGCGGACAAGTGTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTCTGCTGGAACACCTGA
TATTTTGCGCCGTTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCG
GAAATCGCGCAAGACAGGGCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCC
GTTTTTTGCCAAGACCTCGCTTGCCGCTGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCC
AAACCGCCTATTACGGCAACAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGC
CAAAACCCACTCGAACAACCCCTGTTTGAAAACCTCGCCCGCCTGCTTGCCGACACGCTTGCCGCAGCGGAAAAAAGGGA
AGGGGCCGGAGCAGCCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-315)

RecC C-terminal domain (RecC_C)

(781-1000)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

94.123

100

0.941

Multiple sequence alignment