Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   A6J48_RS02800 Genome accession   NZ_CP020420
Coordinates   471401..471874 (-) Length   157 a.a.
NCBI ID   WP_002249319.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466401..476874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J48_RS02770 (A6J48_02685) yaaA 466858..467637 (-) 780 WP_002236895.1 peroxide stress protein YaaA -
  A6J48_RS14365 - 467686..467811 (-) 126 Protein_480 IS5/IS1182 family transposase -
  A6J48_RS02780 (A6J48_02690) dapC 467899..469086 (-) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  A6J48_RS02785 (A6J48_02695) dut 469162..469614 (-) 453 WP_002226436.1 dUTP diphosphatase -
  A6J48_RS02790 (A6J48_02700) - 469757..470185 (+) 429 Protein_483 AzlC family ABC transporter permease -
  A6J48_RS02800 (A6J48_02710) pilX 471401..471874 (-) 474 WP_002249319.1 PilX family type IV pilin Machinery gene
  A6J48_RS02805 (A6J48_02715) pilK 471879..472472 (-) 594 WP_105182897.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J48_RS02810 (A6J48_02720) pilJ 472451..473425 (-) 975 WP_082308618.1 PilW family protein Machinery gene
  A6J48_RS02815 (A6J48_02725) pilI 473422..474030 (-) 609 WP_002242521.1 type IV pilus modification protein PilV Machinery gene
  A6J48_RS02820 (A6J48_02730) pilH 474062..474727 (-) 666 WP_002242526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J48_RS02825 (A6J48_02735) dnaB 475036..476442 (-) 1407 WP_002219448.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17293.01 Da        Isoelectric Point: 9.4513

>NTDB_id=222604 A6J48_RS02800 WP_002249319.1 471401..471874(-) (pilX) [Neisseria meningitidis strain FDAARGOS_209]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIERGYQSQLYTEMVGINNVLKQIILKNPQDDNDTLKIRLEALASGYKM
NPKIAKKYSVSVAFANTEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=222604 A6J48_RS02800 WP_002249319.1 471401..471874(-) (pilX) [Neisseria meningitidis strain FDAARGOS_209]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAGAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGATTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGATACGACTGGAAGCGCTTGCCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGCTTGGTCGG
TGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGGAGACCTTGTCCGCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

87.898

100

0.879
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866

Multiple sequence alignment