Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6J48_RS02805 Genome accession   NZ_CP020420
Coordinates   471879..472472 (-) Length   197 a.a.
NCBI ID   WP_105182897.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_209     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466879..477472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J48_RS14365 - 467686..467811 (-) 126 Protein_480 IS5/IS1182 family transposase -
  A6J48_RS02780 (A6J48_02690) dapC 467899..469086 (-) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  A6J48_RS02785 (A6J48_02695) dut 469162..469614 (-) 453 WP_002226436.1 dUTP diphosphatase -
  A6J48_RS02790 (A6J48_02700) - 469757..470185 (+) 429 Protein_483 AzlC family ABC transporter permease -
  A6J48_RS02800 (A6J48_02710) pilX 471401..471874 (-) 474 WP_002249319.1 PilX family type IV pilin Machinery gene
  A6J48_RS02805 (A6J48_02715) pilK 471879..472472 (-) 594 WP_105182897.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J48_RS02810 (A6J48_02720) pilJ 472451..473425 (-) 975 WP_082308618.1 PilW family protein Machinery gene
  A6J48_RS02815 (A6J48_02725) pilI 473422..474030 (-) 609 WP_002242521.1 type IV pilus modification protein PilV Machinery gene
  A6J48_RS02820 (A6J48_02730) pilH 474062..474727 (-) 666 WP_002242526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J48_RS02825 (A6J48_02735) dnaB 475036..476442 (-) 1407 WP_002219448.1 replicative DNA helicase -
  A6J48_RS02835 (A6J48_02745) - 476606..477193 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21687.45 Da        Isoelectric Point: 4.8857

>NTDB_id=222605 A6J48_RS02805 WP_105182897.1 471879..472472(-) (pilK) [Neisseria meningitidis strain FDAARGOS_209]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYDT
DSKVTFSENCEKGLCTAVNVRTNNGNEEAFDNIVVQGNPTVEAVKRSCPANSTDLCIDNKGMEYKKGTQSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=222605 A6J48_RS02805 WP_105182897.1 471879..472472(-) (pilK) [Neisseria meningitidis strain FDAARGOS_209]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGGTAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTACCG
ACCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGCAAAGTGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.614

100

0.909

Multiple sequence alignment