Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   A6J46_RS10170 Genome accession   NZ_CP020419
Coordinates   1743879..1744496 (-) Length   205 a.a.
NCBI ID   WP_082298766.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_207     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1738879..1749496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J46_RS10140 (A6J46_10220) dut 1740133..1740585 (-) 453 WP_047925987.1 dUTP diphosphatase -
  A6J46_RS10145 (A6J46_13495) - 1740751..1741462 (+) 712 Protein_1748 AzlC family ABC transporter permease -
  A6J46_RS10150 (A6J46_10230) - 1741459..1741767 (+) 309 WP_010951048.1 AzlD family protein -
  A6J46_RS10155 (A6J46_10235) pilL 1741837..1742310 (-) 474 WP_025456309.1 PilX family type IV pilin Machinery gene
  A6J46_RS10160 (A6J46_10240) pilK 1742312..1742923 (-) 612 WP_010951047.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J46_RS10165 (A6J46_10245) pilJ 1742902..1743882 (-) 981 WP_105211411.1 PilW family protein Machinery gene
  A6J46_RS10170 (A6J46_10250) pilI 1743879..1744496 (-) 618 WP_082298766.1 type IV pilus modification protein PilV Machinery gene
  A6J46_RS10175 (A6J46_10255) - 1744528..1745190 (-) 663 Protein_1754 GspH/FimT family pseudopilin -
  A6J46_RS10185 (A6J46_10260) dnaB 1745498..1746904 (-) 1407 WP_082298767.1 replicative DNA helicase -
  A6J46_RS10195 (A6J46_10270) - 1747068..1747650 (+) 583 Protein_1756 superoxide dismutase -
  A6J46_RS10205 (A6J46_10280) - 1747880..1748389 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6J46_RS10210 (A6J46_10285) - 1748719..1749051 (-) 333 WP_003687908.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22221.08 Da        Isoelectric Point: 4.8132

>NTDB_id=222587 A6J46_RS10170 WP_082298766.1 1743879..1744496(-) (pilI) [Neisseria gonorrhoeae strain FDAARGOS_207]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTELYTPTPSGGDFKFNNNNLISKKDLAKAQLDRFGYELKQALPDAVAIHHAVCKDSSGDAPTLSDSGDFSSNCDDK
ANGDTLIKVLWVNDSAGDSDISRTNLGVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=222587 A6J46_RS10170 WP_082298766.1 1743879..1744496(-) (pilI) [Neisseria gonorrhoeae strain FDAARGOS_207]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGAGCTGTACACCCCCACTCCCTCTGGCGGCGATTTCAAGTTTAATAATAATAATTTGATAAGTAA
GAAGGATTTGGCAAAAGCCCAGTTGGACAGGTTCGGTTATGAATTGAAACAAGCCTTGCCGGATGCGGTAGCTATTCATC
ACGCCGTCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGACAGCGGTGATTTTTCTTCAAATTGCGACGATAAG
GCAAACGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGG
GGTGAGCGGCGGCAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

90.244

100

0.902
  pilV Neisseria gonorrhoeae MS11

90.244

100

0.902
  pilV Neisseria meningitidis 8013

82.609

100

0.834

Multiple sequence alignment