Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6J46_RS10160 Genome accession   NZ_CP020419
Coordinates   1742312..1742923 (-) Length   203 a.a.
NCBI ID   WP_010951047.1    Uniprot ID   Q5F9E3
Organism   Neisseria gonorrhoeae strain FDAARGOS_207     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1737312..1747923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J46_RS10130 (A6J46_10210) yaaA 1737933..1738712 (-) 780 WP_047951699.1 peroxide stress protein YaaA -
  A6J46_RS10135 (A6J46_10215) dapC 1738868..1740055 (-) 1188 WP_082298765.1 succinyldiaminopimelate transaminase -
  A6J46_RS10140 (A6J46_10220) dut 1740133..1740585 (-) 453 WP_047925987.1 dUTP diphosphatase -
  A6J46_RS10145 (A6J46_13495) - 1740751..1741462 (+) 712 Protein_1748 AzlC family ABC transporter permease -
  A6J46_RS10150 (A6J46_10230) - 1741459..1741767 (+) 309 WP_010951048.1 AzlD family protein -
  A6J46_RS10155 (A6J46_10235) pilL 1741837..1742310 (-) 474 WP_025456309.1 PilX family type IV pilin Machinery gene
  A6J46_RS10160 (A6J46_10240) pilK 1742312..1742923 (-) 612 WP_010951047.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J46_RS10165 (A6J46_10245) pilJ 1742902..1743882 (-) 981 WP_105211411.1 PilW family protein Machinery gene
  A6J46_RS10170 (A6J46_10250) pilI 1743879..1744496 (-) 618 WP_082298766.1 type IV pilus modification protein PilV Machinery gene
  A6J46_RS10175 (A6J46_10255) - 1744528..1745190 (-) 663 Protein_1754 GspH/FimT family pseudopilin -
  A6J46_RS10185 (A6J46_10260) dnaB 1745498..1746904 (-) 1407 WP_082298767.1 replicative DNA helicase -
  A6J46_RS10195 (A6J46_10270) - 1747068..1747650 (+) 583 Protein_1756 superoxide dismutase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21966.90 Da        Isoelectric Point: 8.0862

>NTDB_id=222585 A6J46_RS10160 WP_010951047.1 1742312..1742923(-) (pilK) [Neisseria gonorrhoeae strain FDAARGOS_207]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGSEEAFGNIVVQGKPAVEAVKRSCPAKSGKNSTDLCIDNKGMEYNKGAAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=222585 A6J46_RS10160 WP_010951047.1 1742312..1742923(-) (pilK) [Neisseria gonorrhoeae strain FDAARGOS_207]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAG
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCGCCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGACCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGCGGCAGGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

92.611

100

0.926

Multiple sequence alignment