Detailed information NTG0222585

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: C2H93_RS20605
• Genome accession: NZ_CP026036
• Coordinates: 4013806..4014927 (+)
• Length: 373 a.a.
• NCBI ID: WP_003234740.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain PK5_16
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 4008806..4019927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2H93_RS20580 (C2H93_20600)	ycdA	4008813..4009877 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
C2H93_RS20585	-	4009878..4010030 (-)	153	WP_021481864.1	hypothetical protein	-
C2H93_RS20590 (C2H93_20605)	ycdB	4010204..4011625 (+)	1422	WP_249852496.1	YcdB/YcdC domain-containing protein	-
C2H93_RS20595 (C2H93_20615)	ycdC	4011812..4013173 (+)	1362	WP_031315681.1	YcdB/YcdC domain-containing protein	-
C2H93_RS20600 (C2H93_20620)	cwlK	4013181..4013683 (-)	503	Protein_4011	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
C2H93_RS20605 (C2H93_20625)	rapF	4013806..4014927 (+)	1122	WP_003234740.1	response regulator aspartate phosphatase RapJ	Regulator
C2H93_RS20610 (C2H93_20630)	ycdF	4015035..4015811 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
C2H93_RS20615 (C2H93_20635)	ycdG	4015836..4017521 (+)	1686	WP_172850455.1	alpha-glucosidase	-
C2H93_RS20620 (C2H93_20640)	znuA	4017708..4018667 (+)	960	WP_038828539.1	metal ABC transporter substrate-binding protein	-
C2H93_RS20625 (C2H93_20645)	znuC	4018722..4019417 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44427.31 Da
• Isoelectric Point: 4.8344

>NTDB_id=222585 C2H93_RS20605 WP_003234740.1 4013806..4014927(+) (rapF) [Bacillus subtilis strain PK5_16]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGNGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=222585 C2H93_RS20605 WP_003234740.1 4013806..4014927(+) (rapF) [Bacillus subtilis strain PK5_16]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTGAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATATTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATTAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGTCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAAGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAACGGTGACCTGAACGTGCTAACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCAGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405