Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J44_RS01715 Genome accession   NZ_CP020418
Coordinates   223927..224358 (+) Length   143 a.a.
NCBI ID   WP_082295362.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 218927..229358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J44_RS01665 (A6J44_01635) - 218965..219381 (+) 417 Protein_244 pilin -
  A6J44_RS01670 (A6J44_01645) - 219990..220394 (+) 405 Protein_245 pilin -
  A6J44_RS01675 (A6J44_01650) - 220421..220771 (+) 351 Protein_246 pilin -
  A6J44_RS01680 (A6J44_01655) - 220798..221190 (+) 393 Protein_247 pilin -
  A6J44_RS01695 (A6J44_01670) - 221585..221962 (+) 378 Protein_248 pilin -
  A6J44_RS01700 (A6J44_01675) - 221962..222315 (+) 354 Protein_249 pilin -
  A6J44_RS01710 (A6J44_01685) lpxC 222898..223821 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  A6J44_RS01715 (A6J44_01695) pilE 223927..224358 (+) 432 WP_082295362.1 pilin Machinery gene
  A6J44_RS01730 (A6J44_01710) pilE 225174..225680 (+) 507 WP_082295363.1 pilin Machinery gene
  A6J44_RS01740 (A6J44_01720) - 226045..226869 (+) 825 WP_082295364.1 opacity family porin -
  A6J44_RS01745 (A6J44_01725) pilA 227135..228388 (-) 1254 WP_047920694.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15394.11 Da        Isoelectric Point: 5.7963

>NTDB_id=222516 A6J44_RS01715 WP_082295362.1 223927..224358(+) (pilE) [Neisseria gonorrhoeae strain FDAARGOS_205]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPENNGDAGVASSSSIIGKYVEEVKVENGVVTAQMASSGVNKEIK
DKKLSLWAKRQDGSVKWFCGQPVTRTEANAKAGTDDVAKDDAAGKKIDTKHLPSTCRDEPTAT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=222516 A6J44_RS01715 WP_082295362.1 223927..224358(+) (pilE) [Neisseria gonorrhoeae strain FDAARGOS_205]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGATGCCGGCGTGGCATCTTCTTCATCAATCATAGGCA
AATATGTTGAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAAGCGGCGTAAACAAAGAAATCAAA
GACAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGA
AGCCAACGCCAAAGCCGGCACCGACGACGTCGCCAAAGACGACGCCGCCGGCAAAAAAATCGACACCAAGCACCTGCCGT
CAACCTGCCGCGATGAACCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.139

100

0.706
  pilE Neisseria gonorrhoeae MS11

67.376

98.601

0.664

Multiple sequence alignment