Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   A6J40_RS08565 Genome accession   NZ_CP020412
Coordinates   1942180..1942884 (+) Length   234 a.a.
NCBI ID   WP_012978820.1    Uniprot ID   -
Organism   Legionella longbeachae strain FDAARGOS_201     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937180..1947884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J40_RS08540 (A6J40_08510) radA 1937464..1938816 (-) 1353 WP_003632963.1 DNA repair protein RadA -
  A6J40_RS08545 (A6J40_08515) - 1938992..1939210 (+) 219 WP_003632964.1 exodeoxyribonuclease VII small subunit -
  A6J40_RS08550 (A6J40_08520) - 1939203..1940084 (+) 882 WP_003632965.1 polyprenyl synthetase family protein -
  A6J40_RS08555 (A6J40_08525) - 1940307..1941098 (+) 792 WP_003632966.1 LirA/MavJ family T4SS effector -
  A6J40_RS08560 (A6J40_08530) bioC 1941285..1942142 (-) 858 WP_003632968.1 malonyl-ACP O-methyltransferase BioC -
  A6J40_RS08565 (A6J40_08535) comFC 1942180..1942884 (+) 705 WP_012978820.1 ComF family protein Machinery gene
  A6J40_RS08570 (A6J40_08540) - 1942907..1943971 (-) 1065 WP_003632970.1 RIP metalloprotease -
  A6J40_RS08575 (A6J40_08545) - 1943983..1944270 (-) 288 WP_003632971.1 hypothetical protein -
  A6J40_RS08580 (A6J40_08550) hemA 1944646..1945920 (+) 1275 WP_080619832.1 glutamyl-tRNA reductase -
  A6J40_RS08585 (A6J40_08555) prfA 1945904..1946992 (+) 1089 WP_080619833.1 peptide chain release factor 1 -
  A6J40_RS08590 (A6J40_08560) prmC 1946985..1947791 (+) 807 WP_080619834.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26940.71 Da        Isoelectric Point: 9.4325

>NTDB_id=222443 A6J40_RS08565 WP_012978820.1 1942180..1942884(+) (comFC) [Legionella longbeachae strain FDAARGOS_201]
MRQKIWSLTQSLRIYSICILCKQYHNDKMAVCSHCIELMPLLGPGCHHCAYPLPDTQFLVCGHCIKNPPSFDRAFIKYTF
EEPLRTLLHQFKYHNGLYLTSFLSYLIFKSLSSQVEMPQCLIPVPMHPQRIKRRGFNQAAILARSLAKKFKLPCDLFSCQ
KTLNTKPQAGLDEKQRKINLRSAFVTHQLPYQHVAIIDDLLTTGNTANELAYTLKKSGVKQVDVWCCARTIEKH

Nucleotide


Download         Length: 705 bp        

>NTDB_id=222443 A6J40_RS08565 WP_012978820.1 1942180..1942884(+) (comFC) [Legionella longbeachae strain FDAARGOS_201]
GTGCGTCAAAAAATATGGAGTTTAACACAAAGTTTACGTATATACTCAATATGTATCTTATGTAAACAATACCACAACGA
TAAAATGGCGGTATGTTCACATTGCATTGAACTCATGCCTTTGTTAGGTCCTGGTTGTCACCATTGTGCTTATCCCTTAC
CAGATACCCAATTTCTCGTCTGTGGGCATTGTATTAAAAATCCACCCTCTTTTGACCGCGCATTCATTAAGTACACTTTT
GAAGAACCCTTGCGTACCCTTTTACACCAATTCAAATATCATAATGGTCTTTATCTTACTTCGTTTCTAAGCTATTTAAT
TTTTAAATCACTATCAAGCCAAGTGGAAATGCCTCAATGTTTGATCCCTGTCCCCATGCATCCACAACGAATTAAACGGC
GTGGATTTAACCAAGCAGCCATCTTGGCTCGTTCTTTAGCTAAAAAATTTAAACTCCCGTGCGATTTATTCAGTTGTCAA
AAAACGCTCAACACCAAACCGCAAGCAGGATTAGATGAAAAACAAAGGAAAATAAATTTACGTTCAGCCTTTGTTACACA
CCAACTACCTTATCAACATGTTGCCATTATCGATGATCTACTAACCACCGGTAATACGGCAAATGAACTGGCGTACACTT
TAAAGAAATCTGGAGTGAAACAGGTGGATGTTTGGTGTTGCGCACGCACCATAGAGAAACACTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

58.974

100

0.59
  comFC Legionella pneumophila strain ERS1305867

59.694

83.761

0.5

Multiple sequence alignment