Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   C2H96_RS17430 Genome accession   NZ_CP026035
Coordinates   3416938..3417942 (+) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain PK5_68     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 3411938..3422942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS17405 (C2H96_17340) murC 3412632..3413930 (+) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -
  C2H96_RS17410 (C2H96_17345) ytxG 3414092..3414514 (+) 423 WP_003229276.1 DUF948 domain-containing protein -
  C2H96_RS17415 (C2H96_17350) ytxH 3414545..3415000 (+) 456 WP_004398549.1 YtxH domain-containing protein -
  C2H96_RS17420 (C2H96_17355) ytxJ 3415024..3415350 (+) 327 WP_032726420.1 bacillithiol system redox-active protein YtxJ -
  C2H96_RS17425 (C2H96_17360) aroX 3415586..3416662 (+) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  C2H96_RS17430 (C2H96_17365) ccpA 3416938..3417942 (+) 1005 WP_003229285.1 catabolite control protein A Regulator
  C2H96_RS17435 (C2H96_17370) motP 3418005..3418823 (+) 819 WP_014477672.1 flagellar motor protein MotP -
  C2H96_RS17440 (C2H96_17375) motS 3418813..3419541 (+) 729 WP_003229290.1 flagellar motor protein MotS -
  C2H96_RS17445 (C2H96_17380) acuC 3419552..3420715 (-) 1164 WP_038828852.1 acetoin utilization protein AcuC -
  C2H96_RS17450 (C2H96_17385) acuB 3420712..3421356 (-) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  C2H96_RS17455 (C2H96_17390) acuA 3421383..3422015 (-) 633 WP_029726417.1 acetoin utilization protein acetyltransferase AcuA -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=222401 C2H96_RS17430 WP_003229285.1 3416938..3417942(+) (ccpA) [Bacillus subtilis strain PK5_68]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=222401 C2H96_RS17430 WP_003229285.1 3416938..3417942(+) (ccpA) [Bacillus subtilis strain PK5_68]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCA
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCCCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCTGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCATTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCAAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment