Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A6J53_RS15220 Genome accession   NZ_CP020401
Coordinates   830939..831403 (+) Length   154 a.a.
NCBI ID   WP_176608593.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 825939..836403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS15220 comE 830939..831403 (+) 465 WP_176608593.1 ComEA family DNA-binding protein Machinery gene
  A6J53_RS05155 (A6J53_05050) comP 831491..831940 (+) 450 WP_002218144.1 type IV pilin protein Machinery gene
  A6J53_RS05160 (A6J53_05055) - 832030..832424 (-) 395 Protein_809 5'-nucleotidase -
  A6J53_RS05165 (A6J53_05060) - 832637..833110 (+) 474 Protein_810 IS5/IS1182 family transposase -
  A6J53_RS05175 (A6J53_05065) - 833516..834571 (+) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  A6J53_RS05180 (A6J53_05070) - 834585..836231 (+) 1647 WP_002214929.1 TIGR02391 family protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16444.74 Da        Isoelectric Point: 10.9585

>NTDB_id=222190 A6J53_RS15220 WP_176608593.1 830939..831403(+) (comE) [Neisseria meningitidis strain FDAARGOS_214]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=222190 A6J53_RS15220 WP_176608593.1 830939..831403(+) (comE) [Neisseria meningitidis strain FDAARGOS_214]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment